Strain identifier

BacDive ID: 139426

Type strain: No

Species: Klebsiella pneumoniae

Strain history: CIP <- 2014, NCTC <- 1974, Beecham Pharm., Rockville, USA: strain BRL 1003

NCBI tax ID(s): 573 (species)

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General

@ref: 41601

BacDive-ID: 139426

keywords: genome sequence, Bacteria, aerobe, Gram-negative

description: Klebsiella pneumoniae CIP 110798 is an aerobe, Gram-negative bacterium that was isolated from Derived from ATCC 15380.

NCBI tax id

  • NCBI tax id: 573
  • Matching level: species

strain history

  • @ref: 41601
  • history: CIP <- 2014, NCTC <- 1974, Beecham Pharm., Rockville, USA: strain BRL 1003

doi: 10.13145/bacdive139426.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Klebsiella
  • species: Klebsiella pneumoniae
  • full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Hyalococcus pneumoniae

@ref: 41601

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Klebsiella

species: Klebsiella pneumoniae

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative100
41601negativerod-shapedno

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41601MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
41601CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
41601positivegrowth30
46983positivegrowth30

Physiology and metabolism

oxygen tolerance

  • @ref: 46983
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837418257ornithine-degradation
6837429016arginine-hydrolysis
6837425094lysine+degradation
6837416199urea+hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol+builds acid from
6837417306maltose+builds acid from
6837415963ribitol+builds acid from
6837418394palatinose+builds acid from
6837415792malonate+assimilation
6837427897tryptophan-energy source
6837417634D-glucose+builds acid from
6837417992sucrose+builds acid from
6837430849L-arabinose+builds acid from
6837418333D-arabitol+builds acid from
6837427082trehalose+builds acid from
6837462345L-rhamnose+builds acid from
6837417268myo-inositol+builds acid from
6837417057cellobiose+builds acid from
6837430911sorbitol+builds acid from

metabolite production

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase+3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase+3.2.1.21
68374lipase-
68374urease+3.5.1.5
68374lysine decarboxylase+4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase-4.1.1.17

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
46983--++-----+++++-+--+++++-++++++--

Isolation, sampling and environmental information

isolation

  • @ref: 46983
  • sample type: Derived from ATCC 15380(NCTC 418)

isolation source categories

  • Cat1: #Host
  • Cat2: #Microbial
  • Cat3: #Bacteria

Safety information

risk assessment

  • @ref: 41601
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Klebsiella pneumoniae NCTC11228GCA_900451865contigncbi573
66792Klebsiella pneumoniae strain NCTC11228573.20149wgspatric573

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno100no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.504no
69480spore-formingspore-formingAbility to form endo- or exosporesno89.829no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no54.009yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno99.5yes
69480flagellatedmotile2+Ability to perform flagellated movementno78.6no

External links

@ref: 41601

culture collection no.: CIP 110798, NCTC 11228, ATCC 29665, CCUG 19208, CECT 140, CECT 997, CNCTC 6124, BRL 1003

literature

topicPubmed-IDtitleauthorsjournalyearmeshtopic2DOI
Metabolism3237119The use of purine compounds as sole sources of carbon and nitrogen by Klebsiella species.Wong SHMicrobios1988Carbon/*metabolism, Culture Media, Guanosine Triphosphate/metabolism, Klebsiella/growth & development/*metabolism, Nitrogen/*metabolism, Pigments, Biological/metabolism, Purines/*metabolismCultivation
Enzymology22154856Efficacies of colistin and tigecycline in mice with experimental pneumonia due to NDM-1-producing strains of Klebsiella pneumoniae and Escherichia coli.Docobo-Perez F, Nordmann P, Dominguez-Herrera J, Lopez-Rojas R, Smani Y, Poirel L, Pachon JInt J Antimicrob Agents2011Animals, Anti-Bacterial Agents/administration & dosage/pharmacokinetics/pharmacology, Bacteremia/drug therapy/microbiology, Bacterial Load, Bacterial Proteins/genetics/metabolism, Colistin/administration & dosage/*analogs & derivatives/pharmacokinetics/pharmacology, Disease Models, Animal, Drug Evaluation, Preclinical, Enterobacteriaceae Infections/*drug therapy/microbiology, Escherichia coli/drug effects/enzymology/*pathogenicity, Female, Klebsiella pneumoniae/drug effects/enzymology/*pathogenicity, Lung/microbiology, Mice, Mice, Inbred C57BL, Microbial Sensitivity Tests, Minocycline/administration & dosage/*analogs & derivatives/pharmacokinetics/pharmacology, Tigecycline, beta-Lactamases/*metabolismMetabolism10.1016/j.ijantimicag.2011.10.012

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41601Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110798Collection of Institut Pasteur (CIP 110798)
46983Curators of the CCUGhttps://www.ccug.se/strain?id=19208Culture Collection University of Gothenburg (CCUG) (CCUG 19208)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68374Automatically annotated from API ID32E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1