Strain identifier

BacDive ID: 139425

Type strain: No

Species: Klebsiella pneumoniae

Strain Designation: KC100

Strain history: CIP <- 2013, KCTC <- SY Lee, Korea: strain KC100

NCBI tax ID(s): 1049565 (strain), 573 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 41592

BacDive-ID: 139425

keywords: genome sequence, Bacteria, mesophilic, Gram-negative

description: Klebsiella pneumoniae KC100 is a mesophilic, Gram-negative bacterium of the family Enterobacteriaceae.

NCBI tax id

NCBI tax idMatching level
1049565strain
573species

strain history

  • @ref: 41592
  • history: CIP <- 2013, KCTC <- SY Lee, Korea: strain KC100

doi: 10.13145/bacdive139425.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Klebsiella
  • species: Klebsiella pneumoniae
  • full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Hyalococcus pneumoniae

@ref: 41592

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Klebsiella

species: Klebsiella pneumoniae

strain designation: KC100

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.979
41592negativerod-shapedno

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41592MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
41592CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

  • @ref: 41592
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.941

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typeisolation date
41592Republic of KoreaKORAsia
41592Republic of KoreaKORAsiaFrom KCTC 2241 by MNNG treatment1887-01-03

Safety information

risk assessment

  • @ref: 41592
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Klebsiella pneumoniae KCTC 2242GCA_000220485completencbi1049565
66792Klebsiella pneumoniae KCTC 22421049565.4completepatric1049565
66792Klebsiella pneumoniae KCTC 22421049565.29plasmidpatric1049565
66792Klebsiella pneumoniae KCTC 2242651053036completeimg1049565

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno84.222no
flagellatedno93.277no
gram-positiveno96.895no
anaerobicno95.864no
aerobicyes87.46no
halophileno89.495no
spore-formingno92.498no
thermophileno99.618yes
glucose-utilyes94.526no
glucose-fermentyes91.594no

External links

@ref: 41592

culture collection no.: CIP 110652, KCTC 2242

straininfo link

  • @ref: 95928
  • straininfo: 105671

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics22535926Complete genome sequence of the 2,3-butanediol-producing Klebsiella pneumoniae strain KCTC 2242.Shin SH, Kim S, Kim JY, Lee S, Um Y, Oh MK, Kim YR, Lee J, Yang KSJ Bacteriol10.1128/JB.00027-122012Butylene Glycols/*metabolism, Chromosomes, Bacterial, Gene Expression Regulation, Bacterial/physiology, Klebsiella pneumoniae/classification/*genetics/*metabolism, Molecular Sequence Data, Plasmids/geneticsMetabolism
Metabolism22814501Enhanced 2,3-butanediol production in recombinant Klebsiella pneumoniae via overexpression of synthesis-related genes.Kim B, Lee S, Park J, Lu M, Oh M, Kim Y, Lee JJ Microbiol Biotechnol10.4014/jmb.1201.010442012Acetolactate Synthase/genetics/metabolism, Alcohol Dehydrogenase/genetics/metabolism, Bacterial Proteins/*genetics/metabolism, Butylene Glycols/*metabolism, Carboxy-Lyases/genetics/metabolism, Cloning, Molecular, Electrophoresis, Polyacrylamide Gel, Fermentation, Gene Expression, Klebsiella pneumoniae/enzymology/*genetics/*metabolism, Recombinant Proteins/biosynthesis/genetics/metabolismEnzymology
Metabolism22832986Removal of pathogenic factors from 2,3-butanediol-producing Klebsiella species by inactivating virulence-related wabG gene.Jung SG, Jang JH, Kim AY, Lim MC, Kim B, Lee J, Kim YRAppl Microbiol Biotechnol10.1007/s00253-012-4284-92012Acetoin/metabolism, Biotechnology/methods, Butylene Glycols/*metabolism, Cell Line, Epithelial Cells/microbiology, *Gene Knockout Techniques, Gene Targeting, Humans, Klebsiella oxytoca/genetics/growth & development/*metabolism/*pathogenicity, Klebsiella pneumoniae/genetics/growth & development/*metabolism/*pathogenicity, Lactates/metabolism, Lipopolysaccharides/biosynthesis, Metabolic Engineering/methods, Recombination, Genetic, Virulence, Virulence Factors/*geneticsPathogenicity
Enzymology23053416Enhanced activity of meso-secondary alcohol dehydrogenase from Klebsiella species by codon optimization.Lee S, Kim B, Oh M, Kim Y, Lee JBioprocess Biosyst Eng10.1007/s00449-012-0824-z2012Alcohol Dehydrogenase/chemistry/genetics/*metabolism, Base Sequence, *Codon, DNA Primers, Electrophoresis, Polyacrylamide Gel, Klebsiella/*enzymology, Molecular Sequence Data, Plasmids, Sequence Homology, Nucleic AcidGenetics
Metabolism23872849The regulation of 2,3-butanediol synthesis in Klebsiella pneumoniae as revealed by gene over-expressions and metabolic flux analysis.Lu M, Park C, Lee S, Kim B, Oh MK, Um Y, Kim J, Lee JBioprocess Biosyst Eng10.1007/s00449-013-0999-y2013Biomass, Butylene Glycols/*metabolism, *Gene Expression, Genes, Bacterial, Klebsiella pneumoniae/genetics/*metabolism
24551820Listeria Monocytogenes La111 and Klebsiella Pneumoniae KCTC 2242: Shine-Dalgarno Sequences.Motalleb GInt J Mol Cell Med2014
Metabolism25329548Redistribution of carbon flux toward 2,3-butanediol production in Klebsiella pneumoniae by metabolic engineering.Kim B, Lee S, Jeong D, Yang J, Oh MK, Lee JPLoS One10.1371/journal.pone.01053222014Batch Cell Culture Techniques, Butylene Glycols/*metabolism, Carbon/*metabolism, Fermentation, Klebsiella pneumoniae/enzymology/*genetics/growth & development/*metabolism, L-Lactate Dehydrogenase/genetics, *Metabolic Engineering, Mutation, Transcription, Genetic/geneticsBiotechnology
Enzymology25392088Complete nucleotide sequence of Klebsiella phage P13 and prediction of an EPS depolymerase gene.Shang A, Liu Y, Wang J, Mo Z, Li G, Mou HVirus Genes10.1007/s11262-014-1138-92014Bacteriophages/enzymology/genetics/*isolation & purification/ultrastructure, Base Composition, Computational Biology, DNA/chemistry/genetics, DNA, Viral/*chemistry/*genetics, Gene Order, *Genome, Viral, Glycoside Hydrolases/*genetics, Klebsiella pneumoniae/*virology, Molecular Sequence Data, Open Reading Frames, Podoviridae/enzymology/genetics/*isolation & purification/ultrastructure, Sequence Analysis, DNA, Sequence HomologyGenetics
Enzymology28545438Investigation of antioxidant, antimicrobial and toxicity activities of lichens from high altitude regions of Nepal.Jha BN, Shrestha M, Pandey DP, Bhattarai T, Bhattarai HD, Paudel BBMC Complement Altern Med10.1186/s12906-017-1797-x2017Altitude, Animals, Antioxidants/chemistry/isolation & purification/*pharmacology/toxicity, Artemia, Gram-Negative Bacteria/drug effects/growth & development, Gram-Positive Bacteria/drug effects/growth & development, Lichens/*chemistry, Microbial Sensitivity Tests, Nepal, Plant Extracts/chemistry/isolation & purification/*pharmacology/toxicityPhylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41592Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110652Collection of Institut Pasteur (CIP 110652)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
95928Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID105671.1