Strain identifier
BacDive ID: 139425
Type strain:
Species: Klebsiella pneumoniae
Strain Designation: KC100
Strain history: CIP <- 2013, KCTC <- SY Lee, Korea: strain KC100
NCBI tax ID(s): 1049565 (strain), 573 (species)
version 8.1 (current version)
General
@ref: 41592
BacDive-ID: 139425
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Klebsiella pneumoniae KC100 is a mesophilic, Gram-negative bacterium of the family Enterobacteriaceae.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1049565 | strain |
573 | species |
strain history
- @ref: 41592
- history: CIP <- 2013, KCTC <- SY Lee, Korea: strain KC100
doi: 10.13145/bacdive139425.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Klebsiella
- species: Klebsiella pneumoniae
- full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Hyalococcus pneumoniae
@ref: 41592
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Klebsiella
species: Klebsiella pneumoniae
strain designation: KC100
type strain: no
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | negative | 99.979 | ||
41592 | negative | rod-shaped | no |
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
41592 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
41592 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
- @ref: 41592
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.941 |
Isolation, sampling and environmental information
isolation
@ref | country | origin.country | continent | sample type | isolation date |
---|---|---|---|---|---|
41592 | Republic of Korea | KOR | Asia | ||
41592 | Republic of Korea | KOR | Asia | From KCTC 2241 by MNNG treatment | 1887-01-03 |
Safety information
risk assessment
- @ref: 41592
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Klebsiella pneumoniae KCTC 2242 | GCA_000220485 | complete | ncbi | 1049565 |
66792 | Klebsiella pneumoniae KCTC 2242 | 1049565.4 | complete | patric | 1049565 |
66792 | Klebsiella pneumoniae KCTC 2242 | 1049565.29 | plasmid | patric | 1049565 |
66792 | Klebsiella pneumoniae KCTC 2242 | 651053036 | complete | img | 1049565 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 84.222 | no |
flagellated | no | 93.277 | no |
gram-positive | no | 96.895 | no |
anaerobic | no | 95.864 | no |
aerobic | yes | 87.46 | no |
halophile | no | 89.495 | no |
spore-forming | no | 92.498 | no |
thermophile | no | 99.618 | yes |
glucose-util | yes | 94.526 | no |
glucose-ferment | yes | 91.594 | no |
External links
@ref: 41592
culture collection no.: CIP 110652, KCTC 2242
straininfo link
- @ref: 95928
- straininfo: 105671
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Genetics | 22535926 | Complete genome sequence of the 2,3-butanediol-producing Klebsiella pneumoniae strain KCTC 2242. | Shin SH, Kim S, Kim JY, Lee S, Um Y, Oh MK, Kim YR, Lee J, Yang KS | J Bacteriol | 10.1128/JB.00027-12 | 2012 | Butylene Glycols/*metabolism, Chromosomes, Bacterial, Gene Expression Regulation, Bacterial/physiology, Klebsiella pneumoniae/classification/*genetics/*metabolism, Molecular Sequence Data, Plasmids/genetics | Metabolism |
Metabolism | 22814501 | Enhanced 2,3-butanediol production in recombinant Klebsiella pneumoniae via overexpression of synthesis-related genes. | Kim B, Lee S, Park J, Lu M, Oh M, Kim Y, Lee J | J Microbiol Biotechnol | 10.4014/jmb.1201.01044 | 2012 | Acetolactate Synthase/genetics/metabolism, Alcohol Dehydrogenase/genetics/metabolism, Bacterial Proteins/*genetics/metabolism, Butylene Glycols/*metabolism, Carboxy-Lyases/genetics/metabolism, Cloning, Molecular, Electrophoresis, Polyacrylamide Gel, Fermentation, Gene Expression, Klebsiella pneumoniae/enzymology/*genetics/*metabolism, Recombinant Proteins/biosynthesis/genetics/metabolism | Enzymology |
Metabolism | 22832986 | Removal of pathogenic factors from 2,3-butanediol-producing Klebsiella species by inactivating virulence-related wabG gene. | Jung SG, Jang JH, Kim AY, Lim MC, Kim B, Lee J, Kim YR | Appl Microbiol Biotechnol | 10.1007/s00253-012-4284-9 | 2012 | Acetoin/metabolism, Biotechnology/methods, Butylene Glycols/*metabolism, Cell Line, Epithelial Cells/microbiology, *Gene Knockout Techniques, Gene Targeting, Humans, Klebsiella oxytoca/genetics/growth & development/*metabolism/*pathogenicity, Klebsiella pneumoniae/genetics/growth & development/*metabolism/*pathogenicity, Lactates/metabolism, Lipopolysaccharides/biosynthesis, Metabolic Engineering/methods, Recombination, Genetic, Virulence, Virulence Factors/*genetics | Pathogenicity |
Enzymology | 23053416 | Enhanced activity of meso-secondary alcohol dehydrogenase from Klebsiella species by codon optimization. | Lee S, Kim B, Oh M, Kim Y, Lee J | Bioprocess Biosyst Eng | 10.1007/s00449-012-0824-z | 2012 | Alcohol Dehydrogenase/chemistry/genetics/*metabolism, Base Sequence, *Codon, DNA Primers, Electrophoresis, Polyacrylamide Gel, Klebsiella/*enzymology, Molecular Sequence Data, Plasmids, Sequence Homology, Nucleic Acid | Genetics |
Metabolism | 23872849 | The regulation of 2,3-butanediol synthesis in Klebsiella pneumoniae as revealed by gene over-expressions and metabolic flux analysis. | Lu M, Park C, Lee S, Kim B, Oh MK, Um Y, Kim J, Lee J | Bioprocess Biosyst Eng | 10.1007/s00449-013-0999-y | 2013 | Biomass, Butylene Glycols/*metabolism, *Gene Expression, Genes, Bacterial, Klebsiella pneumoniae/genetics/*metabolism | |
24551820 | Listeria Monocytogenes La111 and Klebsiella Pneumoniae KCTC 2242: Shine-Dalgarno Sequences. | Motalleb G | Int J Mol Cell Med | 2014 | ||||
Metabolism | 25329548 | Redistribution of carbon flux toward 2,3-butanediol production in Klebsiella pneumoniae by metabolic engineering. | Kim B, Lee S, Jeong D, Yang J, Oh MK, Lee J | PLoS One | 10.1371/journal.pone.0105322 | 2014 | Batch Cell Culture Techniques, Butylene Glycols/*metabolism, Carbon/*metabolism, Fermentation, Klebsiella pneumoniae/enzymology/*genetics/growth & development/*metabolism, L-Lactate Dehydrogenase/genetics, *Metabolic Engineering, Mutation, Transcription, Genetic/genetics | Biotechnology |
Enzymology | 25392088 | Complete nucleotide sequence of Klebsiella phage P13 and prediction of an EPS depolymerase gene. | Shang A, Liu Y, Wang J, Mo Z, Li G, Mou H | Virus Genes | 10.1007/s11262-014-1138-9 | 2014 | Bacteriophages/enzymology/genetics/*isolation & purification/ultrastructure, Base Composition, Computational Biology, DNA/chemistry/genetics, DNA, Viral/*chemistry/*genetics, Gene Order, *Genome, Viral, Glycoside Hydrolases/*genetics, Klebsiella pneumoniae/*virology, Molecular Sequence Data, Open Reading Frames, Podoviridae/enzymology/genetics/*isolation & purification/ultrastructure, Sequence Analysis, DNA, Sequence Homology | Genetics |
Enzymology | 28545438 | Investigation of antioxidant, antimicrobial and toxicity activities of lichens from high altitude regions of Nepal. | Jha BN, Shrestha M, Pandey DP, Bhattarai T, Bhattarai HD, Paudel B | BMC Complement Altern Med | 10.1186/s12906-017-1797-x | 2017 | Altitude, Animals, Antioxidants/chemistry/isolation & purification/*pharmacology/toxicity, Artemia, Gram-Negative Bacteria/drug effects/growth & development, Gram-Positive Bacteria/drug effects/growth & development, Lichens/*chemistry, Microbial Sensitivity Tests, Nepal, Plant Extracts/chemistry/isolation & purification/*pharmacology/toxicity | Phylogeny |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
41592 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110652 | Collection of Institut Pasteur (CIP 110652) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
95928 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID105671.1 |