Strain identifier
BacDive ID: 139405
Type strain: 
Species: Bacillus licheniformis
Strain history: CIP <- 1953, NCTC <- 1925, L. Rosenthal <- E. Duclos, Tyrothrix philiformis
NCBI tax ID(s): 1402 (species)
version 8.1 (current version)
General
@ref: 41560
BacDive-ID: 139405
keywords: genome sequence, Bacteria, spore-forming, mesophilic, motile
description: Bacillus licheniformis CIP 53.172 is a spore-forming, mesophilic, motile bacterium that was isolated from Food, Cheese.
NCBI tax id
- NCBI tax id: 1402
- Matching level: species
strain history
- @ref: 41560
- history: CIP <- 1953, NCTC <- 1925, L. Rosenthal <- E. Duclos, Tyrothrix philiformis
doi: 10.13145/bacdive139405.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus licheniformis
- full scientific name: Bacillus licheniformis (Weigmann 1898) Chester 1901 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Clostridium licheniforme
@ref: 41560
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Bacillus
species: Bacillus licheniformis
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain | cell shape |
|---|---|---|---|---|
| 69480 | yes | 96.726 | ||
| 69480 | 100 | positive | ||
| 41560 | yes | positive | rod-shaped |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 41560 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
| 41560 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 | |
| 41560 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
- @ref: 41560
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
| 41560 | yes |
API biotype100
| @ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41560 | + | + | + | + | + | - | + | + | + | + | + | - | + | - | + | + | + | + | + | + | + | + | + | + | - | - | - | - | - | - | + | + | + | + | + | + | + | - | - | - | - | + | - | + | + | - | - | + | + | + | + | - | - | + | + | + | - | - | - | + | + | + | + | - | - | - | - | - | - | - | - | - | - | + | - | + | - | - | - | + | + | - | + | - | - | - | + | - | - | + | + | + | + | + | + | - | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 41560
- sample type: Food, Cheese
Safety information
risk assessment
- @ref: 41560
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacillus paralicheniformis NCTC 2120 | GCA_007832075 | scaffold | ncbi | 1648923 |
| 66792 | Bacillus paralicheniformis strain NCTC 2120 | 1648923.94 | wgs | patric | 1648923 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 91.378 | no |
| flagellated | yes | 89.692 | no |
| gram-positive | yes | 88.383 | no |
| anaerobic | no | 98.3 | no |
| aerobic | yes | 83.667 | no |
| halophile | yes | 65.457 | no |
| spore-forming | yes | 96.562 | no |
| thermophile | no | 98.815 | yes |
| glucose-util | yes | 89.722 | no |
| glucose-ferment | no | 86.408 | no |
External links
@ref: 41560
culture collection no.: CIP 53.172, ATCC 8187, NCTC 2120, NRRL NRS-778, NRRL: NRS-778
straininfo link
- @ref: 95915
- straininfo: 67366
literature
- topic: Enzymology
- Pubmed-ID: 3031430
- title: Physical mapping of LP51 and LP52 prophages of lysogenic strains of Bacillus licheniformis.
- authors: Doskocil J, Forstova J, Storchova H
- journal: Mol Gen Genet
- DOI: 10.1007/BF00338093
- year: 1986
- mesh: Bacillus/*genetics, Bacteriophages/*genetics, DNA Restriction Enzymes, DNA, Viral/genetics, *Genes, Viral, Lysogeny
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 41560 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2053.172 | Collection of Institut Pasteur (CIP 53.172) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 95915 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID67366.1 |