Strain identifier

BacDive ID: 139245

Type strain: No

Species: Serratia nematodiphila

Strain Designation: PI-3

Strain history: CIP <- 1953, ATCC <- R.S. Breed, Erythrobacillus pyosepticus <- Inst. Pasteur, France: strain PI-3 <- L. Fortuneau

NCBI tax ID(s): 615 (species)

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General

@ref: 41373

BacDive-ID: 139245

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-negative, rod-shaped

description: Serratia nematodiphila PI-3 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from Unknown source.

NCBI tax id

  • NCBI tax id: 615
  • Matching level: species

strain history

  • @ref: 41373
  • history: CIP <- 1953, ATCC <- R.S. Breed, Erythrobacillus pyosepticus <- Inst. Pasteur, France: strain PI-3 <- L. Fortuneau

doi: 10.13145/bacdive139245.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Yersiniaceae
  • genus: Serratia
  • species: Serratia nematodiphila
  • full scientific name: Serratia nematodiphila Zhang et al. 2009

@ref: 41373

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Yersiniaceae

genus: Serratia

species: Serratia nematodiphila

strain designation: PI-3

type strain: no

Morphology

cell morphology

  • @ref: 41373
  • gram stain: negative
  • cell shape: rod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41373MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
41373CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
41373positivegrowth30mesophilic
41373positivegrowth10-41
41373nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 41373
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate-reduction
6836817634D-glucose-fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
4137329864mannitol+fermentation
4137316947citrate+carbon source
4137317234glucose+fermentation
4137317716lactose-fermentation
4137317632nitrate+reduction
4137316301nitrite-reduction
4137315792malonate-assimilation
41373132112sodium thiosulfate-builds gas from

antibiotic resistance

  • @ref: 41373
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteno
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno
4137335581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6836815688acetoin-
6836835581indole-
4137315688acetoin+
4137317234glucose-

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
41373oxidase-
41373beta-galactosidase+3.2.1.23
41373alcohol dehydrogenase-1.1.1.1
41373gelatinase+
41373catalase+1.11.1.6
41373lysine decarboxylase+4.1.1.18
41373ornithine decarboxylase+4.1.1.17
41373phenylalanine ammonia-lyase-4.3.1.24
41373tryptophan deaminase-
41373urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
41373-+++-+--+-++-+-+++--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUNO2N2
41373--------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
41373+++++--+-++------+++----+--++--+++--++-++------+++++-++++++++++----+----++-+++-++-+---+-+++++++--+-

Isolation, sampling and environmental information

isolation

  • @ref: 41373
  • sample type: Unknown source
  • country: France
  • origin.country: FRA
  • continent: Europe

Safety information

risk assessment

  • @ref: 41373
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 41373

culture collection no.: CIP 53.91, ATCC 275

straininfo link

  • @ref: 95794
  • straininfo: 34595

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41373Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2053.91Collection of Institut Pasteur (CIP 53.91)
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
95794Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID34595.1