Strain identifier

BacDive ID: 139200

Type strain: Yes

Species: Helicobacter canis

Strain history: CIP <- 1996, ATCC <- NCTC <- A.P. Burnens

NCBI tax ID(s): 29419 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 41290

BacDive-ID: 139200

keywords: genome sequence, Bacteria, microaerophile, mesophilic, motile

description: Helicobacter canis CIP 104753 is a microaerophile, mesophilic, motile bacterium of the family Helicobacteraceae.

NCBI tax id

  • NCBI tax id: 29419
  • Matching level: species

strain history

  • @ref: 41290
  • history: CIP <- 1996, ATCC <- NCTC <- A.P. Burnens

doi: 10.13145/bacdive139200.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Helicobacteraceae
  • genus: Helicobacter
  • species: Helicobacter canis
  • full scientific name: Helicobacter canis Stanley et al. 1994

@ref: 41290

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Helicobacteraceae

genus: Helicobacter

species: Helicobacter canis

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes94.648
6948099.997negative
41290yesnegativerod-shaped

colony morphology

  • @ref: 41290

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41290MEDIUM 45 - for Columbia agar with sheep bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
41290CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperaturerange
41290positivegrowth37mesophilic
51162positivegrowth37mesophilic
41290positivegrowth37-41
41290nogrowth5psychrophilic
41290nogrowth10psychrophilic
41290nogrowth25mesophilic
41290nogrowth30mesophilic
41290nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 51162
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.995

halophily

  • @ref: 41290
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
41290606565hippurate-hydrolysis
4129017632nitrate-reduction
4129016301nitrite-reduction
6837316199urea-hydrolysis
6837317632nitrate-reduction
68373606565hippurate-hydrolysis
6837378019triphenyltetrazolium chloride+reduction
6837317634D-glucose-assimilation
6837330031succinate-assimilation
6837330089acetate-assimilation
6837317272propionate-assimilation
6837325115malate-assimilation
6837316947citrate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistant
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg
412900129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)yesyesno

metabolite production

@refChebi-IDmetaboliteproduction
6837316136hydrogen sulfideno
4129035581indoleno

enzymes

@refvalueactivityec
68373catalase-1.11.1.6
68373alkaline phosphatase+3.1.3.1
68373L-aspartate arylamidase-3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase+2.3.2.2
68373esterase+
68373urease-3.5.1.5
41290oxidase+
41290gelatinase-
41290DNase-
41290catalase+1.11.1.6
41290gamma-glutamyltransferase-2.3.2.2
41290urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
41290-+++-+----++---+----

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
51162--+-++---+-----------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typesampling dategeographic location
41290SwitzerlandCHEEurope
51162SwitzerlandCHEEuropeDog feces,domestic,with diarrhoeal illness1990Berne
41290SwitzerlandCHEEuropeAnimal, Dog, diarrhea

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Canidae (Dog)
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Infection#Disease

Safety information

risk assessment

  • @ref: 41290
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Helicobacter canis CCUG 32756GCA_017979455contigncbi29419
66792Helicobacter canis strain CCUG 3275629419.10wgspatric29419

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno99.166no
anaerobicno76.523no
halophileno86.866no
spore-formingno94.413no
glucose-utilno88.289yes
motileyes90.331no
flagellatedyes61.086no
thermophileno85.531yes
aerobicno98.606yes
glucose-fermentno84.403no

External links

@ref: 41290

culture collection no.: CIP 104753, ATCC 51401, NCTC 12739, CCUG 32756

straininfo link

  • @ref: 95756
  • straininfo: 10526

literature

  • topic: Phylogeny
  • Pubmed-ID: 8254320
  • title: Helicobacter canis sp. nov., a new species from dogs: an integrated study of phenotype and genotype.
  • authors: Stanley J, Linton D, Burnens AP, Dewhirst FE, Owen RJ, Porter A, On SL, Costas M
  • journal: J Gen Microbiol
  • DOI: 10.1099/00221287-139-10-2495
  • year: 1993
  • mesh: Animals, Bacterial Proteins/analysis, Base Composition, Base Sequence, Chromosomes, Bacterial/chemistry, Cloning, Molecular, DNA Probes, DNA, Bacterial/chemistry/genetics, Dogs/*microbiology, Genotype, Helicobacter/*classification/*genetics/ultrastructure, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41290Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104753Collection of Institut Pasteur (CIP 104753)
51162Curators of the CCUGhttps://www.ccug.se/strain?id=32756Culture Collection University of Gothenburg (CCUG) (CCUG 32756)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68373Automatically annotated from API CAM
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
95756Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID10526.1