Strain identifier
BacDive ID: 139200
Type strain:
Species: Helicobacter canis
Strain history: CIP <- 1996, ATCC <- NCTC <- A.P. Burnens
NCBI tax ID(s): 29419 (species)
version 8.1 (current version)
General
@ref: 41290
BacDive-ID: 139200
keywords: genome sequence, Bacteria, microaerophile, mesophilic, motile
description: Helicobacter canis CIP 104753 is a microaerophile, mesophilic, motile bacterium of the family Helicobacteraceae.
NCBI tax id
- NCBI tax id: 29419
- Matching level: species
strain history
- @ref: 41290
- history: CIP <- 1996, ATCC <- NCTC <- A.P. Burnens
doi: 10.13145/bacdive139200.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Helicobacteraceae
- genus: Helicobacter
- species: Helicobacter canis
- full scientific name: Helicobacter canis Stanley et al. 1994
@ref: 41290
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Helicobacteraceae
genus: Helicobacter
species: Helicobacter canis
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 94.648 | ||
69480 | 99.997 | negative | ||
41290 | yes | negative | rod-shaped |
colony morphology
- @ref: 41290
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
41290 | MEDIUM 45 - for Columbia agar with sheep blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml) | |
41290 | CIP Medium 45 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
41290 | positive | growth | 37 | mesophilic |
51162 | positive | growth | 37 | mesophilic |
41290 | positive | growth | 37-41 | |
41290 | no | growth | 5 | psychrophilic |
41290 | no | growth | 10 | psychrophilic |
41290 | no | growth | 25 | mesophilic |
41290 | no | growth | 30 | mesophilic |
41290 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 51162
- oxygen tolerance: microaerophile
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.995 |
halophily
- @ref: 41290
- salt: NaCl
- growth: no
- tested relation: growth
- concentration: 3.5 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
41290 | 606565 | hippurate | - | hydrolysis |
41290 | 17632 | nitrate | - | reduction |
41290 | 16301 | nitrite | - | reduction |
68373 | 16199 | urea | - | hydrolysis |
68373 | 17632 | nitrate | - | reduction |
68373 | 606565 | hippurate | - | hydrolysis |
68373 | 78019 | triphenyltetrazolium chloride | + | reduction |
68373 | 17634 | D-glucose | - | assimilation |
68373 | 30031 | succinate | - | assimilation |
68373 | 30089 | acetate | - | assimilation |
68373 | 17272 | propionate | - | assimilation |
68373 | 25115 | malate | - | assimilation |
68373 | 16947 | citrate | - | assimilation |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. | is resistant |
---|---|---|---|---|---|---|
68373 | 48923 | erythromycin | yes | yes | 14 µg | |
68373 | 474053 | cefazolin | yes | yes | 224 µg | |
68373 | 100147 | nalidixic acid | yes | yes | 84 µg | |
41290 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) | yes | yes | no |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68373 | 16136 | hydrogen sulfide | no |
41290 | 35581 | indole | no |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68373 | catalase | - | 1.11.1.6 |
68373 | alkaline phosphatase | + | 3.1.3.1 |
68373 | L-aspartate arylamidase | - | 3.4.11.21 |
68373 | L-arginine arylamidase | - | |
68373 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68373 | gamma-glutamyltransferase | + | 2.3.2.2 |
68373 | esterase | + | |
68373 | urease | - | 3.5.1.5 |
41290 | oxidase | + | |
41290 | gelatinase | - | |
41290 | DNase | - | |
41290 | catalase | + | 1.11.1.6 |
41290 | gamma-glutamyltransferase | - | 2.3.2.2 |
41290 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
41290 | - | + | + | + | - | + | - | - | - | - | + | + | - | - | - | + | - | - | - | - |
API CAM
@ref | URE | NIT | EST | HIP | GGT | TTC | PYRA | ArgA | AspA | PAL | H2S | GLU | SUT | NAL | CFZ | ACE | PROP | MLT | CIT | ERO | CAT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
51162 | - | - | + | - | + | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | country | origin.country | continent | sample type | sampling date | geographic location |
---|---|---|---|---|---|---|
41290 | Switzerland | CHE | Europe | |||
51162 | Switzerland | CHE | Europe | Dog feces,domestic,with diarrhoeal illness | 1990 | Berne |
41290 | Switzerland | CHE | Europe | Animal, Dog, diarrhea |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Canidae (Dog) |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
#Infection | #Disease |
Safety information
risk assessment
- @ref: 41290
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Helicobacter canis CCUG 32756 | GCA_017979455 | contig | ncbi | 29419 |
66792 | Helicobacter canis strain CCUG 32756 | 29419.10 | wgs | patric | 29419 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
gram-positive | no | 99.166 | no |
anaerobic | no | 76.523 | no |
halophile | no | 86.866 | no |
spore-forming | no | 94.413 | no |
glucose-util | no | 88.289 | yes |
motile | yes | 90.331 | no |
flagellated | yes | 61.086 | no |
thermophile | no | 85.531 | yes |
aerobic | no | 98.606 | yes |
glucose-ferment | no | 84.403 | no |
External links
@ref: 41290
culture collection no.: CIP 104753, ATCC 51401, NCTC 12739, CCUG 32756
straininfo link
- @ref: 95756
- straininfo: 10526
literature
- topic: Phylogeny
- Pubmed-ID: 8254320
- title: Helicobacter canis sp. nov., a new species from dogs: an integrated study of phenotype and genotype.
- authors: Stanley J, Linton D, Burnens AP, Dewhirst FE, Owen RJ, Porter A, On SL, Costas M
- journal: J Gen Microbiol
- DOI: 10.1099/00221287-139-10-2495
- year: 1993
- mesh: Animals, Bacterial Proteins/analysis, Base Composition, Base Sequence, Chromosomes, Bacterial/chemistry, Cloning, Molecular, DNA Probes, DNA, Bacterial/chemistry/genetics, Dogs/*microbiology, Genotype, Helicobacter/*classification/*genetics/ultrastructure, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
41290 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104753 | Collection of Institut Pasteur (CIP 104753) | |
51162 | Curators of the CCUG | https://www.ccug.se/strain?id=32756 | Culture Collection University of Gothenburg (CCUG) (CCUG 32756) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68373 | Automatically annotated from API CAM | |||
68382 | Automatically annotated from API zym | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
95756 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID10526.1 |