Strain identifier

BacDive ID: 139200

Type strain: Yes

Species: Helicobacter canis

Strain history: CIP <- 1996, ATCC <- NCTC <- A.P. Burnens

NCBI tax ID(s): 29419 (species)

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General

@ref: 41290

BacDive-ID: 139200

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Helicobacter canis CIP 104753 is a microaerophile, mesophilic, Gram-negative bacterium of the family Helicobacteraceae.

NCBI tax id

  • NCBI tax id: 29419
  • Matching level: species

strain history

  • @ref: 41290
  • history: CIP <- 1996, ATCC <- NCTC <- A.P. Burnens

doi: 10.13145/bacdive139200.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Helicobacteraceae
  • genus: Helicobacter
  • species: Helicobacter canis
  • full scientific name: Helicobacter canis Stanley et al. 1994

@ref: 41290

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Helicobacteraceae

genus: Helicobacter

species: Helicobacter canis

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
125439negative98.2
125438negative96.977
41290negativerod-shapedyes

colony morphology

  • @ref: 41290

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41290MEDIUM 45 - for Columbia agar with sheep bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
41290CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperature
41290positivegrowth37
51162positivegrowth37
41290positivegrowth37-41
41290nogrowth5
41290nogrowth10
41290nogrowth25
41290nogrowth30
41290nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 51162
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
125439no99.6
125438no94.057

halophily

  • @ref: 41290
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837316947citrate-assimilation
6837325115malate-assimilation
6837317272propionate-assimilation
6837330089acetate-assimilation
6837330031succinate-assimilation
6837317634D-glucose-assimilation
6837378019triphenyltetrazolium chloride+reduction
68373606565hippurate-hydrolysis
6837317632nitrate-reduction
6837316199urea-hydrolysis
41290606565hippurate-hydrolysis
4129017632nitrate-reduction
4129016301nitrite-reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistant
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg
412900129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)yesyesno

metabolite production

@refChebi-IDmetaboliteproduction
6837316136hydrogen sulfideno
4129035581indoleno

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
41290oxidase+
41290gelatinase-
41290DNase-
41290catalase+1.11.1.6
41290gamma-glutamyltransferase-2.3.2.2
41290urease-3.5.1.5
68373catalase-1.11.1.6
68373alkaline phosphatase+3.1.3.1
68373L-aspartate arylamidase-3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase+2.3.2.2
68373esterase+
68373urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
41290-+++-+----++---+----

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
51162--+-++---+-----------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typesampling dategeographic location
41290SwitzerlandCHEEurope
51162SwitzerlandCHEEuropeDog feces,domestic,with diarrhoeal illness1990Berne
41290SwitzerlandCHEEuropeAnimal, Dog, diarrhea

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Canidae (Dog)
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Infection#Disease

Safety information

risk assessment

  • @ref: 41290
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 124043
  • description: Helicobacter canis strain ATCC 51401 16S ribosomal RNA gene, partial sequence.
  • accession: AY631945
  • length: 1473
  • database: nuccore
  • NCBI tax ID: 29419

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Helicobacter canis CCUG 32756GCA_017979455contigncbi29419
66792Helicobacter canis strain CCUG 3275629419.10wgspatric29419

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno96.977no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no76.163yes
125438spore-formingspore-formingAbility to form endo- or exosporesno94.057no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno82.17no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no85.985yes
125438motile2+flagellatedAbility to perform flagellated movementyes64.279no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno99.6
125439BacteriaNetmotilityAbility to perform movementyes50.5
125439BacteriaNetgram_stainReaction to gram-stainingnegative98.2
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthmicroaerophile89.2

External links

@ref: 41290

culture collection no.: CIP 104753, ATCC 51401, NCTC 12739, CCUG 32756

straininfo link

  • @ref: 95756
  • straininfo: 10526

literature

  • topic: Phylogeny
  • Pubmed-ID: 8254320
  • title: Helicobacter canis sp. nov., a new species from dogs: an integrated study of phenotype and genotype.
  • authors: Stanley J, Linton D, Burnens AP, Dewhirst FE, Owen RJ, Porter A, On SL, Costas M
  • journal: J Gen Microbiol
  • DOI: 10.1099/00221287-139-10-2495
  • year: 1993
  • mesh: Animals, Bacterial Proteins/analysis, Base Composition, Base Sequence, Chromosomes, Bacterial/chemistry, Cloning, Molecular, DNA Probes, DNA, Bacterial/chemistry/genetics, Dogs/*microbiology, Genotype, Helicobacter/*classification/*genetics/ultrastructure, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41290Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104753Collection of Institut Pasteur (CIP 104753)
51162Curators of the CCUGhttps://www.ccug.se/strain?id=32756Culture Collection University of Gothenburg (CCUG) (CCUG 32756)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68373Automatically annotated from API CAM
68382Automatically annotated from API zym
95756Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID10526.1
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG