Strain identifier

BacDive ID: 139194

Type strain: No

Species: Gluconobacter oxydans

Strain history: CIP <- 1996, IFO <- 1953, ATCC, Gluconobacter gluconicus <- NCTC, Acetobacter gluconicus

NCBI tax ID(s): 442 (species)

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General

@ref: 41284

BacDive-ID: 139194

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped

description: Gluconobacter oxydans CIP 104736 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Acetobacteraceae.

NCBI tax id

  • NCBI tax id: 442
  • Matching level: species

strain history

@refhistory
67770IAM 1815 (Gluconobacter cerinus) <-- T. Asai M-2 ("Gluconobacter gluconicum") <-- IFO 3171 <-- ATCC 9324 <-- NCTC 4739 <-- Pribram Collection <-- S. Hermann.
41284CIP <- 1996, IFO <- 1953, ATCC, Gluconobacter gluconicus <- NCTC, Acetobacter gluconicus

doi: 10.13145/bacdive139194.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Gluconobacter
  • species: Gluconobacter oxydans
  • full scientific name: Gluconobacter oxydans (Henneberg 1897) De Ley 1961 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Gluconobacter oxydans subsp. suboxydans
    20215Acetomonas suboxydans
    20215Gluconobacter industrius
    20215Bacterium oxydans
    20215Gluconobacter suboxydans
    20215Gluconobacter uchimurae
    20215Bacterium industrium
    20215Gluconobacter oxydans subsp. industrius
    20215Gluconobacter oxydans subsp. melanogenes
    20215Acetobacter suboxydans
    20215Acetobacter melanogenus

@ref: 41284

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Acetobacteraceae

genus: Gluconobacter

species: Gluconobacter oxydans

type strain: no

Morphology

cell morphology

  • @ref: 41284
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41284MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffiiyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)
41284CIP Medium 1yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=1

culture temp

@refgrowthtypetemperaturerange
41284positivegrowth30mesophilic
67770positivegrowth25mesophilic
41284nogrowth5psychrophilic
41284nogrowth10psychrophilic
41284nogrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 41284
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
41284esculin-hydrolysis4853
41284nitrate-reduction17632
41284nitrite-reduction16301
41284sodium thiosulfate-builds gas from132112

metabolite production

  • @ref: 41284
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
41284oxidase-
41284beta-galactosidase-3.2.1.23
41284alcohol dehydrogenase-1.1.1.1
41284gelatinase-
41284catalase+1.11.1.6
41284lysine decarboxylase-4.1.1.18
41284ornithine decarboxylase-4.1.1.17
41284urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
41284--++-+++++++-----+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
41284----------+/--------------------+/-------------------

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_1213.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_336;97_374;98_960;99_1213&stattab=map
  • Last taxonomy: Gluconobacter
  • 16S sequence: AB178387
  • Sequence Identity:
  • Total samples: 3822
  • soil counts: 546
  • aquatic counts: 376
  • animal counts: 2369
  • plant counts: 531

Safety information

risk assessment

  • @ref: 41284
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Gluconobacter oxydans gene for 16S rRNA, partial sequence, strain:NBRC 3171
  • accession: AB178387
  • length: 1409
  • database: ena
  • NCBI tax ID: 442

External links

@ref: 41284

culture collection no.: CIP 104736, ATCC 9324, IFO 3171, NCTC 4739, JCM 20277, CCM 2370, IAM 1815, LMD 50.9, LMG 1377, LMG 1397, LMG 1574, NBRC 3171, NCIMB 4739

straininfo link

  • @ref: 95752
  • straininfo: 2867

literature

topicPubmed-IDtitleauthorsjournalyearmeshtopic2DOI
Transcriptome10420585Sequence analysis of the Gluconobacter oxydans RecA protein and construction of a recA-deficient mutant.Liu YT, Chen CG, Chao DC, Lee F, Liao CL, Sytwu HK, Chou CF, Ji DDCan J Microbiol1999Acetobacteraceae/*chemistry/*genetics/radiation effects, Amino Acid Sequence, Base Sequence, DNA, DNA Repair, Electroporation, Genes, Bacterial, Molecular Sequence Data, Mutation, Rec A Recombinases/*chemistry/*genetics/metabolism, SOS Response, Genetics, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Ultraviolet RaysGenetics
Genetics12619700Construction of a vector plasmid for use in Gluconobacter oxydans.Tonouchi N, Sugiyama M, Yokozeki KBiosci Biotechnol Biochem2003Escherichia coli/genetics, *Genetic Vectors, Gluconobacter oxydans/*genetics, Molecular Sequence Data, Open Reading Frames/genetics, Plasmids/*genetics, Restriction Mapping10.1271/bbb.67.211
Enzymology15784972Purification and characterization of inducible cephalexin synthesizing enzyme in Gluconobacter oxydans.Shiau CY, Pai SC, Lin WP, Ji DD, Liu YTBiosci Biotechnol Biochem2005Acyltransferases/*biosynthesis/chemistry, Cephalexin/*metabolism, Electrophoresis, Polyacrylamide Gel, Gluconobacter oxydans/*enzymology, Isoelectric FocusingMetabolism10.1271/bbb.69.463

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41284Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104736Collection of Institut Pasteur (CIP 104736)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
95752Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID2867.1