Strain identifier
BacDive ID: 13908
Type strain: 
Species: Thauera aromatica
Strain Designation: K172
Strain history: <- G. Fuchs <- A. Tschech; K172 (Pseudomonas sp.)
NCBI tax ID(s): 59405 (species)
version 8.1 (current version)
General
@ref: 2936
BacDive-ID: 13908
DSM-Number: 6984
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile
description: Thauera aromatica K172 is an aerobe, mesophilic, motile bacterium that was isolated from sewage sludge.
NCBI tax id
- NCBI tax id: 59405
- Matching level: species
strain history
- @ref: 2936
- history: <- G. Fuchs <- A. Tschech; K172 (Pseudomonas sp.)
doi: 10.13145/bacdive13908.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Rhodocyclales
- family: Zoogloeaceae
- genus: Thauera
- species: Thauera aromatica
- full scientific name: Thauera aromatica Anders et al. 1995
@ref: 2936
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Rhizobiales
family: Zoogloeaceae
genus: Thauera
species: Thauera aromatica
full scientific name: Thauera aromatica Anders et al. 1995
strain designation: K172
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 99.167 | |
| 69480 | 99.999 | negative |
multimedia
- @ref: 2936
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_6984.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 2936 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
| 2936 | THAUERA AROMATICA MEDIUM (DSMZ Medium 586) | yes | https://mediadive.dsmz.de/medium/586 | Name: THAUERA AROMATICA MEDIUM (DSMZ Medium 586) Composition: K2HPO4 5.83251 g/l KNO3 1.97044 g/l KH2PO4 0.803941 g/l Na-benzoate 0.70936 g/l NH4Cl 0.522168 g/l MgSO4 x 7 H2O 0.197044 g/l CaCl2 x 2 H2O 0.0246305 g/l HCl 0.0246305 g/l FeCl2 x 4 H2O 0.0147783 g/l CoCl2 x 6 H2O 0.00187192 g/l MnCl2 x 4 H2O 0.000985222 g/l ZnCl2 0.000689655 g/l Na2MoO4 x 2 H2O 0.00035468 g/l p-Aminobenzoic acid 0.000246305 g/l alpha-lipoic acid 0.000246305 g/l Riboflavin 0.000246305 g/l Pantothenic acid 0.000246305 g/l Vitamin B12 0.000246305 g/l Thiamine-HCl x 2 H2O 0.000246305 g/l NiCl2 x 6 H2O 0.000236453 g/l Nicotine amide 0.000123153 g/l Nicotinic acid 0.000123153 g/l Folic acid 9.85222e-05 g/l Biotin 9.85222e-05 g/l H3BO3 5.91133e-05 g/l Pyridoxamine hydrochloride 4.92611e-05 g/l CuCl2 x 2 H2O 1.97044e-05 g/l Distilled water |
culture temp
- @ref: 2936
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 2936 | aerobe |
| 2936 | anaerobe |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 99 |
| 69480 | no | 99.994 |
Isolation, sampling and environmental information
isolation
- @ref: 2936
- sample type: sewage sludge
- geographic location: Konstanz
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Sewage sludge
Safety information
risk assessment
- @ref: 2936
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: T.aromatica 16S rRNA gene
- accession: X77118
- length: 1500
- database: ena
- NCBI tax ID: 59405
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thauera aromatica K172 | GCA_003030465 | complete | ncbi | 44139 |
| 66792 | Thauera aromatica K172 | 44139.8 | complete | patric | 44139 |
| 66792 | Thauera aromatica K172 | 2791355019 | complete | img | 44139 |
GC content
- @ref: 2936
- GC-content: 67.5
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 99 | no |
| flagellated | yes | 67.786 | no |
| gram-positive | no | 99.078 | no |
| anaerobic | no | 90.13 | no |
| halophile | no | 93.131 | no |
| spore-forming | no | 94.314 | no |
| glucose-util | no | 81.404 | no |
| aerobic | no | 72.001 | no |
| thermophile | no | 96.138 | yes |
| motile | yes | 89.403 | no |
| glucose-ferment | no | 90.933 | no |
External links
@ref: 2936
culture collection no.: DSM 6984, CIP 107765
straininfo link
- @ref: 83083
- straininfo: 48343
literature
- topic: Phylogeny
- Pubmed-ID: 29236233
- title: Thauera sinica sp. nov., a phenol derivative-degrading bacterium isolated from activated sludge.
- authors: Qiao N, Xi L, Zhang J, Liu D, Ge B, Liu J
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-017-0993-5
- year: 2017
- mesh: Bacterial Typing Techniques, Base Composition/genetics, DNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sewage/microbiology, Thauera/*genetics/isolation & purification
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2936 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6984) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6984 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 83083 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48343.1 | StrainInfo: A central database for resolving microbial strain identifiers |