Strain identifier

BacDive ID: 139052

Type strain: No

Species: Bordetella holmesii

Strain Designation: 92A 2997, G7702

Strain history: CIP <- 1995, R.S. Weyant, CDC: strain G7702 <- California State Hlth. Dept., CA, USA: strain 92A 2997

NCBI tax ID(s): 35814 (species)

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General

@ref: 41080

BacDive-ID: 139052

keywords: Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped

description: Bordetella holmesii 92A 2997 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Alcaligenaceae.

NCBI tax id

  • NCBI tax id: 35814
  • Matching level: species

strain history

  • @ref: 41080
  • history: CIP <- 1995, R.S. Weyant, CDC: strain G7702 <- California State Hlth. Dept., CA, USA: strain 92A 2997

doi: 10.13145/bacdive139052.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Bordetella
  • species: Bordetella holmesii
  • full scientific name: Bordetella holmesii Weyant et al. 1995

@ref: 41080

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Bordetella

species: Bordetella holmesii

strain designation: 92A 2997, G7702

type strain: no

Morphology

cell morphology

  • @ref: 41080
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 41080

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41080MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
41080CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
41080positivegrowth37mesophilic
41080positivegrowth30-37mesophilic
41080nogrowth5psychrophilic
41080nogrowth10psychrophilic
41080nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 41080
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4108016947citrate-carbon source
410804853esculin-hydrolysis
4108017632nitrate-reduction
4108016301nitrite-reduction
41080132112sodium thiosulfate-builds gas from
4108017632nitrate-respiration

metabolite production

  • @ref: 41080
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
41080oxidase+
41080beta-galactosidase-3.2.1.23
41080alcohol dehydrogenase-1.1.1.1
41080gelatinase-
41080catalase-1.11.1.6
41080lysine decarboxylase-4.1.1.18
41080ornithine decarboxylase-4.1.1.17
41080urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    51919C12:00.712
    51919C14:01.114
    51919C16:030.716
    51919C18:04.218
    51919C12:0 2OH4.513.178
    51919C14:0 2OH4.815.205
    51919C14:0 3OH/C16:1 ISO I10.615.485
    51919C16:1 ω7c10.615.819
    51919C17:0 CYCLO29.916.888
    51919C18:2 ω6,9c/C18:0 ANTE2.517.724
    51919Unidentified0.618.443
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
41080--++-----------+----

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
41080CAUSAUSANorth America
51919CaliforniaUSAUSANorth AmericaHuman blood,dog bite,Hodgkin's disease
41080CaliforniaUnited States of AmericaUSANorth AmericaHuman, Dog bite1992

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Blood
#Host#Mammals#Canidae (Dog)
#Host Body-Site#Other#Wound
#Host#Human

Safety information

risk assessment

  • @ref: 41080
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 41080

culture collection no.: CIP 104395, ATCC 700052, LMG 15946, NCTC 13202, CCUG 34074

straininfo link

  • @ref: 95636
  • straininfo: 9898

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41080Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104395Collection of Institut Pasteur (CIP 104395)
51919Curators of the CCUGhttps://www.ccug.se/strain?id=34074Culture Collection University of Gothenburg (CCUG) (CCUG 34074)
68382Automatically annotated from API zym
95636Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID9898.1