Strain identifier
BacDive ID: 139052
Type strain:
Species: Bordetella holmesii
Strain Designation: 92A 2997, G7702
Strain history: CIP <- 1995, R.S. Weyant, CDC: strain G7702 <- California State Hlth. Dept., CA, USA: strain 92A 2997
NCBI tax ID(s): 35814 (species)
General
@ref: 41080
BacDive-ID: 139052
keywords: Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped
description: Bordetella holmesii 92A 2997 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Alcaligenaceae.
NCBI tax id
- NCBI tax id: 35814
- Matching level: species
strain history
- @ref: 41080
- history: CIP <- 1995, R.S. Weyant, CDC: strain G7702 <- California State Hlth. Dept., CA, USA: strain 92A 2997
doi: 10.13145/bacdive139052.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Bordetella
- species: Bordetella holmesii
- full scientific name: Bordetella holmesii Weyant et al. 1995
@ref: 41080
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Bordetella
species: Bordetella holmesii
strain designation: 92A 2997, G7702
type strain: no
Morphology
cell morphology
- @ref: 41080
- gram stain: negative
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 41080
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
41080 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
41080 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
41080 | positive | growth | 37 | mesophilic |
41080 | positive | growth | 30-37 | mesophilic |
41080 | no | growth | 5 | psychrophilic |
41080 | no | growth | 10 | psychrophilic |
41080 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 41080
- oxygen tolerance: obligate aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
41080 | 16947 | citrate | - | carbon source |
41080 | 4853 | esculin | - | hydrolysis |
41080 | 17632 | nitrate | - | reduction |
41080 | 16301 | nitrite | - | reduction |
41080 | 132112 | sodium thiosulfate | - | builds gas from |
41080 | 17632 | nitrate | - | respiration |
metabolite production
- @ref: 41080
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
41080 | oxidase | + | |
41080 | beta-galactosidase | - | 3.2.1.23 |
41080 | alcohol dehydrogenase | - | 1.1.1.1 |
41080 | gelatinase | - | |
41080 | catalase | - | 1.11.1.6 |
41080 | lysine decarboxylase | - | 4.1.1.18 |
41080 | ornithine decarboxylase | - | 4.1.1.17 |
41080 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 51919 C12:0 0.7 12 51919 C14:0 1.1 14 51919 C16:0 30.7 16 51919 C18:0 4.2 18 51919 C12:0 2OH 4.5 13.178 51919 C14:0 2OH 4.8 15.205 51919 C14:0 3OH/C16:1 ISO I 10.6 15.485 51919 C16:1 ω7c 10.6 15.819 51919 C17:0 CYCLO 29.9 16.888 51919 C18:2 ω6,9c/C18:0 ANTE 2.5 17.724 51919 Unidentified 0.6 18.443 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
41080 | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | geographic location | country | origin.country | continent | sample type | isolation date |
---|---|---|---|---|---|---|
41080 | CA | USA | USA | North America | ||
51919 | California | USA | USA | North America | Human blood,dog bite,Hodgkin's disease | |
41080 | California | United States of America | USA | North America | Human, Dog bite | 1992 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body Product | #Fluids | #Blood |
#Host | #Mammals | #Canidae (Dog) |
#Host Body-Site | #Other | #Wound |
#Host | #Human |
Safety information
risk assessment
- @ref: 41080
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
External links
@ref: 41080
culture collection no.: CIP 104395, ATCC 700052, LMG 15946, NCTC 13202, CCUG 34074
straininfo link
- @ref: 95636
- straininfo: 9898
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
41080 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104395 | Collection of Institut Pasteur (CIP 104395) | |
51919 | Curators of the CCUG | https://www.ccug.se/strain?id=34074 | Culture Collection University of Gothenburg (CCUG) (CCUG 34074) | |
68382 | Automatically annotated from API zym | |||
95636 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID9898.1 |