Strain identifier
BacDive ID: 139016
Type strain: 
Species: Shigella dysenteriae
Strain Designation: 52287
Strain history: CIP <- 1953, L. Chambon, Saigon, Vietnam: strain 52287
NCBI tax ID(s): 622 (species)
version 8.1 (current version)
General
@ref: 41018
BacDive-ID: 139016
keywords: genome sequence, Bacteria, mesophilic
description: Shigella dysenteriae 52287 is a mesophilic bacterium of the family Enterobacteriaceae.
NCBI tax id
- NCBI tax id: 622
- Matching level: species
strain history
| @ref | history |
|---|---|
| 41018 | 1953, L. Chambon, Saigon, Vietnam: strain 52287 |
| 41018 | CIP <- 1953, L. Chambon, Saigon, Vietnam: strain 52287 |
doi: 10.13145/bacdive139016.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Shigella
- species: Shigella dysenteriae
- full scientific name: Shigella dysenteriae (Shiga 1897) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus dysentericus
@ref: 41018
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Shigella
species: Shigella dysenteriae
strain designation: 52287
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 41018 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
| 41018 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
- @ref: 41018
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
| @ref | country | origin.country | continent | sample type | geographic location | isolation date |
|---|---|---|---|---|---|---|
| 41018 | Vietnam | VNM | Asia | |||
| 41018 | Vietnam | VNM | Asia | Human, Faeces | Saigon | 1952-06-26 |
Safety information
risk assessment
- @ref: 41018
- biosafety level: 3
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Shigella dysenteriae strain CIP53.136
- accession: 622.135
- assembly level: wgs
- database: patric
- NCBI tax ID: 622
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | no | 98.103 | no |
| anaerobic | no | 93.707 | no |
| halophile | no | 91.58 | no |
| spore-forming | no | 94.599 | no |
| glucose-util | yes | 91.653 | no |
| thermophile | no | 99.072 | yes |
| flagellated | no | 82.668 | no |
| aerobic | yes | 76.396 | no |
| motile | yes | 65.994 | no |
| glucose-ferment | yes | 93.112 | no |
External links
@ref: 41018
culture collection no.: CIP 53.136
straininfo link
- @ref: 95604
- straininfo: 70115
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 41018 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2053.136 | Collection of Institut Pasteur (CIP 53.136) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 95604 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID70115.1 |