Strain identifier

BacDive ID: 13898

Type strain: Yes

Species: Propionivibrio pelophilus

Strain Designation: asp66

Strain history: <- T. A. Hansen, Univ. Groningen, The Netherlands; asp66 <- A. J. M. Stams {1982}

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General

@ref: 4577

BacDive-ID: 13898

DSM-Number: 12018

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Propionivibrio pelophilus asp66 is an anaerobe, mesophilic bacterium that was isolated from anoxic sediment.

NCBI tax id

NCBI tax idMatching level
1123006strain
65401species

strain history

  • @ref: 4577
  • history: <- T. A. Hansen, Univ. Groningen, The Netherlands; asp66 <- A. J. M. Stams {1982}

doi: 10.13145/bacdive13898.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Rhodocyclales
  • family: Rhodocyclaceae
  • genus: Propionivibrio
  • species: Propionivibrio pelophilus
  • full scientific name: Propionivibrio pelophilus (Meijer et al. 1999) Brune et al. 2002
  • synonyms

    • @ref: 20215
    • synonym: Propionibacter pelophilus

@ref: 4577

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Rhizobiales

family: Rhodocyclaceae

genus: Propionivibrio

species: Propionivibrio pelophilus

full scientific name: Propionivibrio pelophilus (Meijer et al. 1999) Brune et al. 2002

strain designation: asp66

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 4577
  • name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/503
  • composition: Name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503; with strain-specific modifications) Composition: L-Aspartic acid 2.65204 g/l Na2CO3 1.49551 g/l NaCl 0.997008 g/l KCl 0.498505 g/l MgCl2 x 6 H2O 0.398803 g/l Na2S x 9 H2O 0.299103 g/l NH4Cl 0.249252 g/l KH2PO4 0.199402 g/l Yeast extract 0.199402 g/l CaCl2 x 2 H2O 0.149552 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l Pyridoxine hydrochloride 0.000299103 g/l Nicotinic acid 0.000199402 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l CoCl2 x 6 H2O 0.000189432 g/l Calcium pantothenate 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l D-(+)-biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water

culture temp

  • @ref: 4577
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 4577
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 4577
  • sample type: anoxic sediment
  • geographic location: Ems-Dollart
  • country: Netherlands
  • origin.country: NLD
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Sediment
#Condition#Anoxic (anaerobic)

taxonmaps

  • @ref: 69479
  • File name: preview.99_38080.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_129;96_14292;97_17423;98_27950;99_38080&stattab=map
  • Last taxonomy: Propionivibrio pelophilus subclade
  • 16S sequence: AF016690
  • Sequence Identity:
  • Total samples: 239
  • soil counts: 6
  • aquatic counts: 225
  • animal counts: 7
  • plant counts: 1

Safety information

risk assessment

  • @ref: 4577
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 4577
  • description: Propionibacter pelophilus 16S ribosomal RNA gene, complete sequence
  • accession: AF016690
  • length: 1485
  • database: ena
  • NCBI tax ID: 65401

Genome sequences

  • @ref: 66792
  • description: Propionivibrio pelophilus DSM 12018
  • accession: 2574180451
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1123006

GC content

  • @ref: 4577
  • GC-content: 60.8
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 4577

culture collection no.: DSM 12018

straininfo link

  • @ref: 83073
  • straininfo: 49222

literature

  • topic: Phylogeny
  • Pubmed-ID: 10425761
  • title: Fermentative bacteria from estuarine mud: phylogenetic position of Acidaminobacter hydrogenoformans and description of a new type of gram-negative, propionigenic bacterium as Propionibacter pelophilus gen. nov., sp. nov.
  • authors: Meijer WG, Nienhuis-Kuiper ME, Hansen TA
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-49-3-1039
  • year: 1999
  • mesh: Anaerobiosis, DNA, Bacterial/chemistry/genetics, Genes, rRNA, Geologic Sediments/*microbiology, Gram-Negative Bacteria/*classification/genetics/isolation & purification/metabolism, Gram-Positive Bacteria/*classification/genetics/isolation & purification/metabolism, Molecular Sequence Data, *Phylogeny, Propionates/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
4577Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12018)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12018
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83073Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49222.1StrainInfo: A central database for resolving microbial strain identifiers