Strain identifier
BacDive ID: 13898
Type strain:
Species: Propionivibrio pelophilus
Strain Designation: asp66
Strain history: <- T. A. Hansen, Univ. Groningen, The Netherlands; asp66 <- A. J. M. Stams {1982}
NCBI tax ID(s): 1123006 (strain), 65401 (species)
General
@ref: 4577
BacDive-ID: 13898
DSM-Number: 12018
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Propionivibrio pelophilus asp66 is an anaerobe, mesophilic bacterium that was isolated from anoxic sediment.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1123006 | strain |
65401 | species |
strain history
- @ref: 4577
- history: <- T. A. Hansen, Univ. Groningen, The Netherlands; asp66 <- A. J. M. Stams {1982}
doi: 10.13145/bacdive13898.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Rhodocyclales
- family: Rhodocyclaceae
- genus: Propionivibrio
- species: Propionivibrio pelophilus
- full scientific name: Propionivibrio pelophilus (Meijer et al. 1999) Brune et al. 2002
synonyms
- @ref: 20215
- synonym: Propionibacter pelophilus
@ref: 4577
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Rhizobiales
family: Rhodocyclaceae
genus: Propionivibrio
species: Propionivibrio pelophilus
full scientific name: Propionivibrio pelophilus (Meijer et al. 1999) Brune et al. 2002
strain designation: asp66
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4577
- name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503)
- growth: yes
- link: https://mediadive.dsmz.de/medium/503
- composition: Name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503; with strain-specific modifications) Composition: L-Aspartic acid 2.65204 g/l Na2CO3 1.49551 g/l NaCl 0.997008 g/l KCl 0.498505 g/l MgCl2 x 6 H2O 0.398803 g/l Na2S x 9 H2O 0.299103 g/l NH4Cl 0.249252 g/l KH2PO4 0.199402 g/l Yeast extract 0.199402 g/l CaCl2 x 2 H2O 0.149552 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l Pyridoxine hydrochloride 0.000299103 g/l Nicotinic acid 0.000199402 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l CoCl2 x 6 H2O 0.000189432 g/l Calcium pantothenate 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l D-(+)-biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water
culture temp
- @ref: 4577
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4577
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4577
- sample type: anoxic sediment
- geographic location: Ems-Dollart
- country: Netherlands
- origin.country: NLD
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Sediment |
#Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_38080.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_129;96_14292;97_17423;98_27950;99_38080&stattab=map
- Last taxonomy: Propionivibrio pelophilus subclade
- 16S sequence: AF016690
- Sequence Identity:
- Total samples: 239
- soil counts: 6
- aquatic counts: 225
- animal counts: 7
- plant counts: 1
Safety information
risk assessment
- @ref: 4577
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4577
- description: Propionibacter pelophilus 16S ribosomal RNA gene, complete sequence
- accession: AF016690
- length: 1485
- database: ena
- NCBI tax ID: 65401
Genome sequences
- @ref: 66792
- description: Propionivibrio pelophilus DSM 12018
- accession: 2574180451
- assembly level: draft
- database: img
- NCBI tax ID: 1123006
GC content
- @ref: 4577
- GC-content: 60.8
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 4577
culture collection no.: DSM 12018
straininfo link
- @ref: 83073
- straininfo: 49222
literature
- topic: Phylogeny
- Pubmed-ID: 10425761
- title: Fermentative bacteria from estuarine mud: phylogenetic position of Acidaminobacter hydrogenoformans and description of a new type of gram-negative, propionigenic bacterium as Propionibacter pelophilus gen. nov., sp. nov.
- authors: Meijer WG, Nienhuis-Kuiper ME, Hansen TA
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-49-3-1039
- year: 1999
- mesh: Anaerobiosis, DNA, Bacterial/chemistry/genetics, Genes, rRNA, Geologic Sediments/*microbiology, Gram-Negative Bacteria/*classification/genetics/isolation & purification/metabolism, Gram-Positive Bacteria/*classification/genetics/isolation & purification/metabolism, Molecular Sequence Data, *Phylogeny, Propionates/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
4577 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12018) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12018 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
83073 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49222.1 | StrainInfo: A central database for resolving microbial strain identifiers |