Strain identifier
BacDive ID: 13894
Type strain:
Species: Dechloromonas agitata
Strain Designation: CKB
Strain history: <- J. D. Coates; CKB
NCBI tax ID(s): 73030 (species)
General
@ref: 5029
BacDive-ID: 13894
DSM-Number: 13637
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Dechloromonas agitata CKB is an aerobe, mesophilic bacterium that was isolated from waste from pulp and paper plant.
NCBI tax id
- NCBI tax id: 73030
- Matching level: species
strain history
- @ref: 5029
- history: <- J. D. Coates; CKB
doi: 10.13145/bacdive13894.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Rhodocyclales
- family: Azonexaceae
- genus: Dechloromonas
- species: Dechloromonas agitata
- full scientific name: Dechloromonas agitata Achenbach et al. 2001
synonyms
- @ref: 20215
- synonym: Dechlorimonas agitatus
@ref: 5029
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Rhizobiales
family: Azonexaceae
genus: Dechloromonas
species: Dechloromonas agitata
full scientific name: Dechloromonas agitata Achenbach et al. 2001
strain designation: CKB
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5029
- name: MEDIUM FOR CHLORATE RESPIRERS (DSMZ Medium 908)
- growth: yes
- link: https://mediadive.dsmz.de/medium/908
- composition: Name: MEDIUM FOR CHLORATE RESPIRERS (DSMZ Medium 908) Composition: NaHCO3 2.43665 g/l Na-acetate 1.32554 g/l NaClO3 0.974659 g/l NaH2PO4 0.584795 g/l NH4Cl 0.243665 g/l KCl 0.0974659 g/l MgSO4 0.0292398 g/l CaCl2 x 2 H2O 0.00974659 g/l HCl 0.00243665 g/l FeCl2 x 4 H2O 0.00146199 g/l alpha-lipoic acid 0.000243665 g/l p-Aminobenzoic acid 0.000243665 g/l Na2MoO4 0.000243665 g/l Thiamine-HCl x 2 H2O 0.000243665 g/l Na2WO4 x 2 H2O 0.000243665 g/l Vitamin B12 0.000243665 g/l Riboflavin 0.000243665 g/l Pantothenic acid 0.000243665 g/l CoCl2 x 6 H2O 0.000185185 g/l Nicotine amide 0.000121832 g/l Nicotinic acid 0.000121832 g/l Folic acid 9.74659e-05 g/l Biotin 9.74659e-05 g/l MnCl2 x 4 H2O 9.74659e-05 g/l ZnCl2 6.82261e-05 g/l Pyridoxamine hydrochloride 4.87329e-05 g/l Na2MoO4 x 2 H2O 3.50877e-05 g/l NiCl2 x 6 H2O 2.33918e-05 g/l H3BO3 5.84795e-06 g/l CuCl2 x 2 H2O 1.94932e-06 g/l Distilled water
culture temp
- @ref: 5029
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
5029 | aerobe |
5029 | anaerobe |
compound production
- @ref: 5029
- compound: chlorite dismutase
Isolation, sampling and environmental information
isolation
- @ref: 5029
- sample type: waste from pulp and paper plant
- geographic location: Pennsylvania, York
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Industrial | #Plant (Factory) |
#Engineered | #Waste |
taxonmaps
- @ref: 69479
- File name: preview.99_8152.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_129;96_2421;97_2948;98_5934;99_8152&stattab=map
- Last taxonomy: Dechloromonas
- 16S sequence: AF047462
- Sequence Identity:
- Total samples: 652
- soil counts: 40
- aquatic counts: 324
- animal counts: 182
- plant counts: 106
Safety information
risk assessment
- @ref: 5029
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5029
- description: Dechlorimonas agitatus 16S ribosomal RNA gene, complete sequence
- accession: AF047462
- length: 1506
- database: ena
- NCBI tax ID: 73030
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Dechloromonas agitata CKB | 2506520023 | draft | img | 73030 |
66792 | Dechloromonas agitata DSM 13637 | GCA_028864255 | contig | ncbi | 73030 |
External links
@ref: 5029
culture collection no.: DSM 13637, ATCC 700666
straininfo link
- @ref: 83069
- straininfo: 44066
literature
- topic: Phylogeny
- Pubmed-ID: 16166710
- title: Dechloromonas hortensis sp. nov. and strain ASK-1, two novel (per)chlorate-reducing bacteria, and taxonomic description of strain GR-1.
- authors: Wolterink A, Kim S, Muusse M, Kim IS, Roholl PJM, van Ginkel CG, Stams AJM, Kengen SWM
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.63404-0
- year: 2005
- mesh: Chlorates/*metabolism, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidation-Reduction, Perchlorates/*metabolism, RNA, Ribosomal, 16S/genetics, Rhodocyclaceae/*classification/genetics/isolation & purification/metabolism, Sequence Analysis, DNA, Sewage/*microbiology, *Soil Microbiology, Species Specificity, Waste Disposal, Fluid/methods, Water Pollution, Chemical
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
5029 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13637) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13637 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
83069 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID44066.1 | StrainInfo: A central database for resolving microbial strain identifiers |