Strain identifier
BacDive ID: 13892
Type strain: 
Species: Azospira oryzae
Strain Designation: 6a3
Strain history: <- CCUG <- D. Janssens <- B. Reinhold-Hurek
NCBI tax ID(s): 146939 (species)
version 8.1 (current version)
General
@ref: 15522
BacDive-ID: 13892
DSM-Number: 21223
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Azospira oryzae 6a3 is a mesophilic bacterium that was isolated from surface sterilized roots of kallar grass.
NCBI tax id
- NCBI tax id: 146939
- Matching level: species
strain history
- @ref: 15522
- history: <- CCUG <- D. Janssens <- B. Reinhold-Hurek
doi: 10.13145/bacdive13892.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Rhodocyclales
- family: Rhodocyclaceae
- genus: Azospira
- species: Azospira oryzae
- full scientific name: Azospira oryzae Reinhold-Hurek and Hurek 2000
synonyms
@ref synonym 20215 Dechlorisoma suillus 20215 Dechlorosoma suillum 20215 Dechloromonas suillum
@ref: 15522
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Rhizobiales
family: Rhodocyclaceae
genus: Azospira
species: Azospira oryzae
full scientific name: Azospira oryzae Reinhold-Hurek and Hurek 2000 emend. Tan and Reinhold-Hurek 2003
strain designation: 6a3
type strain: yes
Culture and growth conditions
culture medium
- @ref: 15522
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 15522
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 15522 | surface sterilized roots of kallar grass | Punjab | Pakistan | PAK | Asia |
| 56594 | Kallar grass,surface-sterilized roots | Punjab | Pakistan | PAK | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
| #Host Body-Site | #Plant | #Sterilized plant part |
taxonmaps
- @ref: 69479
- File name: preview.99_4972.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_129;96_2435;97_2968;98_3718;99_4972&stattab=map
- Last taxonomy: Azospira oryzae subclade
- 16S sequence: AF011347
- Sequence Identity:
- Total samples: 32001
- soil counts: 5057
- aquatic counts: 15144
- animal counts: 9661
- plant counts: 2139
Safety information
risk assessment
- @ref: 15522
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15522
- description: Azospira oryzae 16S ribosomal RNA gene, partial sequence
- accession: AF011347
- length: 1436
- database: ena
- NCBI tax ID: 146939
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Azospira oryzae DSM 21223 | GCA_004217225 | scaffold | ncbi | 146939 |
| 66792 | Azospira oryzae strain DSM 21223 | 146939.10 | wgs | patric | 146939 |
| 66792 | Azospira oryzae 6a3 | 2547132512 | draft | img | 146939 |
| 66792 | Azospira oryzae DSM 21223 | 2795386137 | draft | img | 146939 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 83.73 | no |
| gram-positive | no | 99.396 | no |
| anaerobic | no | 72.706 | no |
| aerobic | no | 81.545 | no |
| halophile | no | 97.308 | no |
| spore-forming | no | 94.837 | no |
| glucose-util | no | 82.794 | no |
| thermophile | no | 95.75 | yes |
| motile | yes | 93.311 | no |
| glucose-ferment | no | 91.342 | no |
External links
@ref: 15522
culture collection no.: DSM 21223, CCUG 45016, LMG 9096
straininfo link
- @ref: 83067
- straininfo: 92126
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 15522 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21223) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21223 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 56594 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 45016) | https://www.ccug.se/strain?id=45016 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 83067 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92126.1 | StrainInfo: A central database for resolving microbial strain identifiers |