Strain identifier
BacDive ID: 138916
Type strain: 
Species: Staphylococcus aureus
Strain history: CIP <- 1965, J. Pillet, Inst. Pasteur, Paris, France <- NCTC <- 1951, B.C. Hobbs, PHLS, Colindale, UK
NCBI tax ID(s): 1280 (species)
version 8.1 (current version)
General
@ref: 40906
BacDive-ID: 138916
keywords: genome sequence, Bacteria, mesophilic, Gram-positive
description: Staphylococcus aureus CIP 65.18 is a mesophilic, Gram-positive bacterium that was isolated from Human, Unknown source.
NCBI tax id
- NCBI tax id: 1280
- Matching level: species
strain history
- @ref: 40906
- history: CIP <- 1965, J. Pillet, Inst. Pasteur, Paris, France <- NCTC <- 1951, B.C. Hobbs, PHLS, Colindale, UK
doi: 10.13145/bacdive138916.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Staphylococcaceae
- genus: Staphylococcus
- species: Staphylococcus aureus
- full scientific name: Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Staphylococcus aureus subsp. anaerobius
@ref: 40906
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Staphylococcaceae
genus: Staphylococcus
species: Staphylococcus aureus
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 40906 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
| 40906 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 | |
| 40906 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
- @ref: 40906
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.881 |
Isolation, sampling and environmental information
isolation
- @ref: 40906
- sample type: Human, Unknown source
Safety information
risk assessment
- @ref: 40906
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Staphylococcus aureus NCTC8725 | GCA_900458025 | contig | ncbi | 1280 |
| 66792 | Staphylococcus aureus strain NCTC8725 | 1280.18088 | wgs | patric | 1280 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 88.983 | no |
| gram-positive | yes | 87.898 | no |
| anaerobic | no | 99.475 | no |
| aerobic | yes | 88.218 | no |
| halophile | yes | 93.525 | no |
| spore-forming | no | 92.814 | no |
| glucose-util | yes | 89.099 | no |
| flagellated | no | 90.804 | no |
| thermophile | no | 99.604 | no |
| glucose-ferment | yes | 86.268 | no |
External links
@ref: 40906
culture collection no.: CIP 65.18, ATCC 12609, NCTC 8725
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 40906 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2065.18 | Collection of Institut Pasteur (CIP 65.18) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |