Strain identifier

BacDive ID: 138905

Type strain: No

Species: Vibrio cholerae

Strain Designation: HK1

Strain history: CIP <- 1963, J. Gallut, Inst. Pasteur, Paris, France: strain HK1 <- Hongkong, China

NCBI tax ID(s): 666 (species)

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General

@ref: 40892

BacDive-ID: 138905

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Vibrio cholerae HK1 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Vibrionaceae.

NCBI tax id

  • NCBI tax id: 666
  • Matching level: species

strain history

  • @ref: 40892
  • history: CIP <- 1963, J. Gallut, Inst. Pasteur, Paris, France: strain HK1 <- Hongkong, China

doi: 10.13145/bacdive138905.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio cholerae
  • full scientific name: Vibrio cholerae Pacini 1854 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Vibrio albensis

@ref: 40892

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio cholerae

strain designation: HK1

type strain: no

Morphology

cell morphology

  • @ref: 40892
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
40892MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
40892CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
40892positivegrowth30mesophilic
40892positivegrowth22-37
40892nogrowth5psychrophilic
40892nogrowth15psychrophilic
40892nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 40892
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
40892NaClpositivegrowth0-4 %
40892NaClnogrowth6 %
40892NaClnogrowth8 %
40892NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4089216947citrate+carbon source
408924853esculin-hydrolysis
4089217234glucose+fermentation
4089217716lactose+fermentation
4089217632nitrate+reduction
4089216301nitrite-reduction
40892132112sodium thiosulfate-builds gas from
4089217234glucose+degradation
4089217632nitrate+respiration

metabolite production

  • @ref: 40892
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
4089215688acetoin+
4089217234glucose-

enzymes

@refvalueactivityec
40892oxidase+
40892beta-galactosidase+3.2.1.23
40892alcohol dehydrogenase-1.1.1.1
40892gelatinase+
40892amylase+
40892DNase+
40892caseinase+3.4.21.50
40892catalase+1.11.1.6
40892tween esterase+
40892gamma-glutamyltransferase+2.3.2.2
40892lecithinase+
40892lipase+
40892lysine decarboxylase+4.1.1.18
40892ornithine decarboxylase+4.1.1.17
40892phenylalanine ammonia-lyase-4.3.1.24
40892protease+
40892tryptophan deaminase-
40892urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
40892-+++++-----+-----+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
40892+++++--+-++------+-+-----------+-+--------------+++--+-----++--------------+--+++-+---+--++++++---+

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
40892Hong-KongChinaCHNAsia
40892Hong KongChinaCHNAsiaEpidemia1961-09-01

Safety information

risk assessment

  • @ref: 40892
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 40892

culture collection no.: CIP 63.32

straininfo link

  • @ref: 95537
  • straininfo: 70604

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
40892Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2063.32Collection of Institut Pasteur (CIP 63.32)
68382Automatically annotated from API zym
95537Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID70604.1