Strain identifier

BacDive ID: 13888

Type strain: Yes

Species: Azonexus fungiphilus

Strain Designation: BS5-8

Strain history: <- LMG <- B. Reinhold-Hurek, MPI Inst. Terrestrial Microbiol., Marburg, Germany

NCBI tax ID(s): 146940 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17396

BacDive-ID: 13888

DSM-Number: 23841

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile

description: Azonexus fungiphilus BS5-8 is an aerobe, mesophilic, motile bacterium that was isolated from rice soil,.

NCBI tax id

  • NCBI tax id: 146940
  • Matching level: species

strain history

  • @ref: 17396
  • history: <- LMG <- B. Reinhold-Hurek, MPI Inst. Terrestrial Microbiol., Marburg, Germany

doi: 10.13145/bacdive13888.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Rhodocyclales
  • family: Azonexaceae
  • genus: Azonexus
  • species: Azonexus fungiphilus
  • full scientific name: Azonexus fungiphilus Reinhold-Hurek and Hurek 2000

@ref: 17396

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Rhizobiales

family: Azonexaceae

genus: Azonexus

species: Azonexus fungiphilus

full scientific name: Azonexus fungiphilus Reinhold-Hurek and Hurek 2000

strain designation: BS5-8

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes98.142
6948099.997negative

Culture and growth conditions

culture medium

  • @ref: 17396
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17396positivegrowth28mesophilic
57329positivegrowth30-37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 57329
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.998

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
17396rice soil,PunjabPakistanPAKAsia
57329Soil,rice,black sclerotium of a basidiomycetePunjabPakistanPAKAsia1996

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_32838.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_129;96_5616;97_19458;98_24295;99_32838&stattab=map
  • Last taxonomy: Azonexus fungiphilus subclade
  • 16S sequence: AF011350
  • Sequence Identity:
  • Total samples: 661
  • soil counts: 20
  • aquatic counts: 509
  • animal counts: 114
  • plant counts: 18

Safety information

risk assessment

  • @ref: 17396
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17396
  • description: Azonexus fungiphilus 16S ribosomal RNA gene, partial sequence
  • accession: AF011350
  • length: 1475
  • database: ena
  • NCBI tax ID: 146940

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Azonexus fungiphilus DSM 23841GCA_003634965scaffoldncbi146940
66792Azonexus fungiphilus strain DSM 23841146940.3wgspatric146940
66792Azonexus fungiphilus DSM 238412770939617draftimg146940

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes91.202no
gram-positiveno99.108no
anaerobicno93.555yes
aerobicno58.807yes
halophileno94.468no
spore-formingno96.601no
glucose-utilno83.792no
thermophileno96.275yes
motileyes93.14no
glucose-fermentno89.639no

External links

@ref: 17396

culture collection no.: DSM 23841, CCUG 46758, LMG 19178

straininfo link

  • @ref: 83063
  • straininfo: 13093

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16627652Azonexus caeni sp. nov., a denitrifying bacterium isolated from sludge of a wastewater treatment plant.Quan ZX, Im WT, Lee STInt J Syst Evol Microbiol10.1099/ijs.0.64019-02006Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis/isolation & purification, Genes, rRNA, Microscopy, Electron, Transmission, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis/isolation & purification, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhodocyclaceae/*classification/cytology/*isolation & purification/physiology, Sequence Analysis, DNA, Sewage/*microbiology, Water MicrobiologyEnzymology
Phylogeny18398200Azonexus hydrophilus sp. nov., a nifH gene-harbouring bacterium isolated from freshwater.Chou JH, Jiang SR, Cho JC, Song J, Lin MC, Chen WMInt J Syst Evol Microbiol10.1099/ijs.0.65434-02008DNA, Bacterial/genetics, Fatty Acids/metabolism, Fresh Water/microbiology, Genes, Bacterial, Molecular Sequence Data, Oxidoreductases/*genetics, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhodocyclaceae/classification/*genetics/*isolation & purification/metabolism, Species Specificity, Taiwan, Terminology as TopicMetabolism

Reference

@idauthorscataloguedoi/urltitle
17396Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23841)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23841
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
57329Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 46758)https://www.ccug.se/strain?id=46758
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83063Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13093.1StrainInfo: A central database for resolving microbial strain identifiers