Strain identifier
BacDive ID: 13888
Type strain:
Species: Azonexus fungiphilus
Strain Designation: BS5-8
Strain history: <- LMG <- B. Reinhold-Hurek, MPI Inst. Terrestrial Microbiol., Marburg, Germany
NCBI tax ID(s): 146940 (species)
General
@ref: 17396
BacDive-ID: 13888
DSM-Number: 23841
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile
description: Azonexus fungiphilus BS5-8 is an aerobe, mesophilic, motile bacterium that was isolated from rice soil,.
NCBI tax id
- NCBI tax id: 146940
- Matching level: species
strain history
- @ref: 17396
- history: <- LMG <- B. Reinhold-Hurek, MPI Inst. Terrestrial Microbiol., Marburg, Germany
doi: 10.13145/bacdive13888.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Rhodocyclales
- family: Azonexaceae
- genus: Azonexus
- species: Azonexus fungiphilus
- full scientific name: Azonexus fungiphilus Reinhold-Hurek and Hurek 2000
@ref: 17396
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Rhizobiales
family: Azonexaceae
genus: Azonexus
species: Azonexus fungiphilus
full scientific name: Azonexus fungiphilus Reinhold-Hurek and Hurek 2000
strain designation: BS5-8
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 98.142 | |
69480 | 99.997 | negative |
Culture and growth conditions
culture medium
- @ref: 17396
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
17396 | positive | growth | 28 | mesophilic |
57329 | positive | growth | 30-37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 57329
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.998 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date |
---|---|---|---|---|---|---|
17396 | rice soil, | Punjab | Pakistan | PAK | Asia | |
57329 | Soil,rice,black sclerotium of a basidiomycete | Punjab | Pakistan | PAK | Asia | 1996 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_32838.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_129;96_5616;97_19458;98_24295;99_32838&stattab=map
- Last taxonomy: Azonexus fungiphilus subclade
- 16S sequence: AF011350
- Sequence Identity:
- Total samples: 661
- soil counts: 20
- aquatic counts: 509
- animal counts: 114
- plant counts: 18
Safety information
risk assessment
- @ref: 17396
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17396
- description: Azonexus fungiphilus 16S ribosomal RNA gene, partial sequence
- accession: AF011350
- length: 1475
- database: ena
- NCBI tax ID: 146940
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Azonexus fungiphilus DSM 23841 | GCA_003634965 | scaffold | ncbi | 146940 |
66792 | Azonexus fungiphilus strain DSM 23841 | 146940.3 | wgs | patric | 146940 |
66792 | Azonexus fungiphilus DSM 23841 | 2770939617 | draft | img | 146940 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | yes | 91.202 | no |
gram-positive | no | 99.108 | no |
anaerobic | no | 93.555 | yes |
aerobic | no | 58.807 | yes |
halophile | no | 94.468 | no |
spore-forming | no | 96.601 | no |
glucose-util | no | 83.792 | no |
thermophile | no | 96.275 | yes |
motile | yes | 93.14 | no |
glucose-ferment | no | 89.639 | no |
External links
@ref: 17396
culture collection no.: DSM 23841, CCUG 46758, LMG 19178
straininfo link
- @ref: 83063
- straininfo: 13093
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 16627652 | Azonexus caeni sp. nov., a denitrifying bacterium isolated from sludge of a wastewater treatment plant. | Quan ZX, Im WT, Lee ST | Int J Syst Evol Microbiol | 10.1099/ijs.0.64019-0 | 2006 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis/isolation & purification, Genes, rRNA, Microscopy, Electron, Transmission, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis/isolation & purification, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhodocyclaceae/*classification/cytology/*isolation & purification/physiology, Sequence Analysis, DNA, Sewage/*microbiology, Water Microbiology | Enzymology |
Phylogeny | 18398200 | Azonexus hydrophilus sp. nov., a nifH gene-harbouring bacterium isolated from freshwater. | Chou JH, Jiang SR, Cho JC, Song J, Lin MC, Chen WM | Int J Syst Evol Microbiol | 10.1099/ijs.0.65434-0 | 2008 | DNA, Bacterial/genetics, Fatty Acids/metabolism, Fresh Water/microbiology, Genes, Bacterial, Molecular Sequence Data, Oxidoreductases/*genetics, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhodocyclaceae/classification/*genetics/*isolation & purification/metabolism, Species Specificity, Taiwan, Terminology as Topic | Metabolism |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
17396 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23841) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23841 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
57329 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 46758) | https://www.ccug.se/strain?id=46758 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
83063 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13093.1 | StrainInfo: A central database for resolving microbial strain identifiers |