Strain identifier
BacDive ID: 13883
Type strain:
Species: Aromatoleum anaerobium
Strain Designation: LuFRes1
Strain history: <- B. Philipp, Universität Tübingen, Lehrstuhl Mikrobiologie, Germany; LuFRes1 <- N. Gorny {1989}
NCBI tax ID(s): 182180 (species)
General
@ref: 4598
BacDive-ID: 13883
DSM-Number: 12081
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Aromatoleum anaerobium LuFRes1 is an anaerobe, mesophilic bacterium that was isolated from digested anaerobic sewage sludge.
NCBI tax id
- NCBI tax id: 182180
- Matching level: species
strain history
- @ref: 4598
- history: <- B. Philipp, Universität Tübingen, Lehrstuhl Mikrobiologie, Germany; LuFRes1 <- N. Gorny {1989}
doi: 10.13145/bacdive13883.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Rhodocyclales
- family: Zoogloeaceae
- genus: Aromatoleum
- species: Aromatoleum anaerobium
- full scientific name: Aromatoleum anaerobium (Springer et al. 1998) Rabus et al. 2019
synonyms
- @ref: 20215
- synonym: Azoarcus anaerobius
@ref: 4598
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Rhizobiales
family: Zoogloeaceae
genus: Aromatoleum
species: Aromatoleum anaerobium
full scientific name: Aromatoleum anaerobium (Springer et al. 1998) Rabus et al. 2019
strain designation: LuFRes1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4598
- name: FWM MEDIUM (PERCHLORATE) (DSMZ Medium 503b)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium503b.pdf
culture temp
- @ref: 4598
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4598
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4598
- sample type: digested anaerobic sewage sludge
- geographic location: Tübingen
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Waste | #Sewage sludge |
#Condition | #Anoxic (anaerobic) |
Safety information
risk assessment
- @ref: 4598
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4598
- description: Azoarcus anaerobius 16S rRNA gene
- accession: Y14701
- length: 1531
- database: ena
- NCBI tax ID: 182180
Genome sequences
- @ref: 66792
- description: Aromatoleum anaerobium LuFRes1
- accession: GCA_012910705
- assembly level: contig
- database: ncbi
- NCBI tax ID: 182180
GC content
- @ref: 4598
- GC-content: 66.5
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 87.665 | no |
motile | yes | 87.665 | no |
flagellated | yes | 65.768 | no |
flagellated | yes | 65.768 | no |
gram-positive | no | 98.772 | no |
gram-positive | no | 98.772 | no |
anaerobic | no | 89.699 | no |
anaerobic | no | 89.699 | no |
aerobic | no | 77.534 | yes |
aerobic | no | 77.534 | yes |
halophile | no | 93.833 | no |
halophile | no | 93.833 | no |
spore-forming | no | 93.849 | no |
spore-forming | no | 93.849 | no |
thermophile | no | 94.232 | yes |
thermophile | no | 94.232 | yes |
glucose-util | no | 66.764 | no |
glucose-util | no | 66.764 | no |
glucose-ferment | no | 89.125 | no |
glucose-ferment | no | 89.125 | no |
External links
@ref: 4598
culture collection no.: DSM 12081, LMG 30943
straininfo link
- @ref: 83058
- straininfo: 49233
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Metabolism | 9658009 | Evidence of two oxidative reaction steps initiating anaerobic degradation of resorcinol (1,3-dihydroxybenzene) by the denitrifying bacterium Azoarcus anaerobius. | Philipp B, Schink B | J Bacteriol | 10.1128/JB.180.14.3644-3649.1998 | 1998 | Anaerobiosis, Biodegradation, Environmental, Gram-Negative Facultatively Anaerobic Rods/*metabolism, Hydroquinones/*metabolism, Oxidation-Reduction, Resorcinols/*metabolism | |
Phylogeny | 9734051 | Azoarcus anaerobius sp. nov., a resorcinol-degrading, strictly anaerobic, denitrifying bacterium. | Springer N, Ludwig W, Philipp B, Schink B | Int J Syst Bacteriol | 10.1099/00207713-48-3-953 | 1998 | Base Sequence, DNA, Ribosomal/chemistry, Gram-Negative Anaerobic Bacteria/*classification/isolation & purification/metabolism, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, Resorcinols/*metabolism | Metabolism |
32915288 | Resorcinol Hydroxylase of Azoarcus anaerobius: Molybdenum Dependence, Activity, and Heterologous Expression. | Darley PI, Hellstern J, Schink B, Philipp B | Curr Microbiol | 10.1007/s00284-020-02186-x | 2020 | Azoarcus/genetics, *Escherichia coli/genetics, Mixed Function Oxygenases, *Molybdenum |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
4598 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12081) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12081 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
83058 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49233.1 | StrainInfo: A central database for resolving microbial strain identifiers |