Strain identifier
BacDive ID: 138826
Type strain:
Species: Ureaplasma urealyticum
Strain Designation: 2K 160, 960 (CX8)
Strain history: CIP <- 1993, D. Roulland-Dussoix, Inst. Pasteur, Paris: strain 2K 160 <- M.C. Shepard: T-strain 960 (CX8)
NCBI tax ID(s): 2130 (species)
General
@ref: 40780
BacDive-ID: 138826
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Ureaplasma urealyticum 2K 160 is a mesophilic, Gram-negative bacterium that was isolated from Human, Nongonococcal urethritis.
NCBI tax id
- NCBI tax id: 2130
- Matching level: species
strain history
- @ref: 40780
- history: CIP <- 1993, D. Roulland-Dussoix, Inst. Pasteur, Paris: strain 2K 160 <- M.C. Shepard: T-strain 960 (CX8)
doi: 10.13145/bacdive138826.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmoidales
- family: Mycoplasmoidaceae
- genus: Ureaplasma
- species: Ureaplasma urealyticum
- full scientific name: Ureaplasma urealyticum Shepard et al. 1974 (Approved Lists 1980)
@ref: 40780
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Mycoplasmatales
family: Mycoplasmataceae
genus: Ureaplasma
species: Ureaplasma urealyticum
strain designation: 2K 160, 960 (CX8)
type strain: yes
Morphology
cell morphology
- @ref: 40780
- gram stain: negative
- motility: no
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
40780 | MEDIUM 80 - for Ureaplasma urealyticum | yes | Distilled water make up to (740.000 ml);Trypto casein soy broth (24.000 g);Yeast extract solution 25 % - M00263 (20.000 ml);0.1 % Phenol red - M00387 (20.000 ml);Sterile supplement - M00270 (220.000 ml) | |
40780 | CIP Medium 80 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=80 |
culture temp
- @ref: 40780
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 40780
- sample type: Human, Nongonococcal urethritis
Safety information
risk assessment
- @ref: 40780
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Ureaplasma urealyticum serovar 8 str. ATCC 27618 | GCA_000169535 | contig | ncbi | 626095 |
66792 | Ureaplasma urealyticum serovar 8 str. ATCC 27618 | 626095.4 | wgs | patric | 626095 |
66792 | Ureaplasma urealyticum sv. 8 ATCC 27618 | 645951872 | draft | img | 626095 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
gram-positive | yes | 56.955 | no |
anaerobic | no | 95.912 | no |
halophile | yes | 51.078 | no |
spore-forming | no | 98.143 | no |
glucose-util | yes | 84.128 | no |
flagellated | no | 97.281 | no |
aerobic | no | 94.749 | no |
thermophile | no | 97.593 | no |
motile | no | 93.402 | no |
glucose-ferment | yes | 76.007 | no |
External links
@ref: 40780
culture collection no.: CIP 103755, ATCC 27618, NCTC 10177, CCUG 38149, CCUG 50782
straininfo link
- @ref: 95468
- straininfo: 39089
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 11931172 | Proposal of Ureaplasma parvum sp. nov. and emended description of Ureaplasma urealyticum (Shepard et al. 1974) Robertson et al. 2001. | Robertson JA, Stemke GW, Davis JW, Harasawa R, Thirkell D, Kong F, Shepard MC, Ford DK | Int J Syst Evol Microbiol | 10.1099/00207713-52-2-587 | 2002 | Genotype, Guidelines as Topic, Humans, Molecular Sequence Data, Phenotype, Species Specificity, Ureaplasma/*classification/isolation & purification, Ureaplasma urealyticum/classification/isolation & purification | Genetics |
Pathogenicity | 18707551 | Transition mutations in 23S rRNA account for acquired resistance to macrolides in Ureaplasma urealyticum. | Dongya M, Wencheng X, Xiaobo M, Lu W | Microb Drug Resist | 10.1089/mdr.2008.0817 | 2008 | Anti-Bacterial Agents/*pharmacology, Base Sequence, Drug Resistance, Bacterial/*genetics, Humans, Macrolides/pharmacology, Microbial Sensitivity Tests, Molecular Sequence Data, Mutation, Phenotype, RNA, Ribosomal, 23S/*genetics, Ureaplasma urealyticum/*drug effects/genetics/isolation & purification | Genetics |
Metabolism | 31525453 | Differential cytokine and metabolite production by cervicovaginal epithelial cells infected with Lactobacillus crispatus and Ureaplasma urealyticum. | Cavanagh M, Amabebe E, Anumba DOC | Anaerobe | 10.1016/j.anaerobe.2019.102101 | 2019 | Biomarkers, Cytokines/*metabolism, Epithelial Cells/metabolism/microbiology, Female, Gram-Negative Bacterial Infections/microbiology, HeLa Cells, Host-Pathogen Interactions, Humans, L-Lactate Dehydrogenase/metabolism, Lactobacillus crispatus/*physiology, Mucous Membrane/*metabolism/*microbiology, Ureaplasma Infections/microbiology, Ureaplasma urealyticum/*physiology, Vagina/*metabolism/*microbiology | Pathogenicity |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
40780 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103755 | Collection of Institut Pasteur (CIP 103755) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
95468 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID39089.1 |