Strain identifier
BacDive ID: 138792
Type strain:
Species: Shewanella algae
Strain history: CIP <- 1992, T. Vidalenc, Sanofi Diagnostics Pasteur, Marnes-la-Coquette, France: strain Am MS201, Pseudomonas putrefaciens, Shewanella putrefaciens
NCBI tax ID(s): 38313 (species)
General
@ref: 40664
BacDive-ID: 138792
keywords: genome sequence, Bacteria, obligate aerobe, mesophilic, motile
description: Shewanella algae CIP 103562 is an obligate aerobe, mesophilic, motile bacterium that was isolated from Human, Clinical isolate.
NCBI tax id
- NCBI tax id: 38313
- Matching level: species
strain history
- @ref: 40664
- history: CIP <- 1992, T. Vidalenc, Sanofi Diagnostics Pasteur, Marnes-la-Coquette, France: strain Am MS201, Pseudomonas putrefaciens, Shewanella putrefaciens
doi: 10.13145/bacdive138792.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella algae
- full scientific name: Shewanella algae corrig. Simidu et al. 1990
synonyms
@ref synonym 20215 Shewanella haliotis 20215 Shewanella alga 20215 Shewanella upenei
@ref: 40664
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella algae
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 98.409 | ||
69480 | 99.986 | negative | ||
40664 | no | negative | rod-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
40664 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
40664 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 | |
40664 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
40664 | positive | growth | 25 | mesophilic |
40664 | positive | growth | 25-37 | mesophilic |
40664 | no | growth | 5 | psychrophilic |
40664 | no | growth | 10 | psychrophilic |
40664 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 40664
- oxygen tolerance: obligate aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.62 |
40664 | no |
halophily
- @ref: 40664
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-10 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
40664 | 16947 | citrate | - | carbon source |
40664 | 4853 | esculin | - | hydrolysis |
40664 | 17632 | nitrate | + | reduction |
40664 | 16301 | nitrite | + | reduction |
40664 | 132112 | sodium thiosulfate | + | builds gas from |
40664 | 17632 | nitrate | + | respiration |
antibiotic resistance
- @ref: 40664
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 40664
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
40664 | oxidase | + | |
40664 | beta-galactosidase | - | 3.2.1.23 |
40664 | alcohol dehydrogenase | - | 1.1.1.1 |
40664 | gelatinase | + | |
40664 | amylase | - | |
40664 | DNase | + | |
40664 | caseinase | + | 3.4.21.50 |
40664 | catalase | + | 1.11.1.6 |
40664 | tween esterase | + | |
40664 | lecithinase | + | |
40664 | lipase | + | |
40664 | lysine decarboxylase | - | 4.1.1.18 |
40664 | ornithine decarboxylase | + | 4.1.1.17 |
40664 | protease | + | |
40664 | tryptophan deaminase | - | |
40664 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | + | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
40664 | - | + | + | + | - | + | + | + | + | + | + | + | - | - | - | - | - | + | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
40664 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | + | - | - | + | + | - | + | - | - | - | - | - | + | + | + | - | - | - | + | - | + | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 40664
- sample type: Human, Clinical isolate
Safety information
risk assessment
- @ref: 40664
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Shewanella algae ATCC 49138 | GCA_019670525 | complete | ncbi | 38313 |
66792 | Shewanella algae strain ATCC 49138 | 38313.158 | complete | patric | 38313 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | yes | 93.159 | no |
gram-positive | no | 99.088 | no |
anaerobic | no | 94.602 | no |
aerobic | yes | 51.056 | no |
halophile | no | 59.012 | no |
spore-forming | no | 95.743 | no |
motile | yes | 94.537 | no |
thermophile | no | 99.564 | yes |
glucose-util | yes | 90.905 | no |
glucose-ferment | no | 65.105 | no |
External links
@ref: 40664
culture collection no.: CIP 103562, ATCC 49138
straininfo link
- @ref: 95443
- straininfo: 42316
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
40664 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103562 | Collection of Institut Pasteur (CIP 103562) | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
68382 | Automatically annotated from API zym | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
95443 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID42316.1 |