Strain identifier

BacDive ID: 138792

Type strain: No

Species: Shewanella algae

Strain history: CIP <- 1992, T. Vidalenc, Sanofi Diagnostics Pasteur, Marnes-la-Coquette, France: strain Am MS201, Pseudomonas putrefaciens, Shewanella putrefaciens

NCBI tax ID(s): 38313 (species)

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General

@ref: 40664

BacDive-ID: 138792

keywords: genome sequence, Bacteria, obligate aerobe, mesophilic, motile

description: Shewanella algae CIP 103562 is an obligate aerobe, mesophilic, motile bacterium that was isolated from Human, Clinical isolate.

NCBI tax id

  • NCBI tax id: 38313
  • Matching level: species

strain history

  • @ref: 40664
  • history: CIP <- 1992, T. Vidalenc, Sanofi Diagnostics Pasteur, Marnes-la-Coquette, France: strain Am MS201, Pseudomonas putrefaciens, Shewanella putrefaciens

doi: 10.13145/bacdive138792.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Shewanellaceae
  • genus: Shewanella
  • species: Shewanella algae
  • full scientific name: Shewanella algae corrig. Simidu et al. 1990

  • synonyms

    @refsynonym
    20215Shewanella haliotis
    20215Shewanella alga
    20215Shewanella upenei

@ref: 40664

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Shewanellaceae

genus: Shewanella

species: Shewanella algae

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.409
6948099.986negative
40664nonegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
40664MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
40664CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
40664CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
40664positivegrowth25mesophilic
40664positivegrowth25-37mesophilic
40664nogrowth5psychrophilic
40664nogrowth10psychrophilic
40664nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 40664
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.62
40664no

halophily

  • @ref: 40664
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4066416947citrate-carbon source
406644853esculin-hydrolysis
4066417632nitrate+reduction
4066416301nitrite+reduction
40664132112sodium thiosulfate+builds gas from
4066417632nitrate+respiration

antibiotic resistance

  • @ref: 40664
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 40664
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
40664oxidase+
40664beta-galactosidase-3.2.1.23
40664alcohol dehydrogenase-1.1.1.1
40664gelatinase+
40664amylase-
40664DNase+
40664caseinase+3.4.21.50
40664catalase+1.11.1.6
40664tween esterase+
40664lecithinase+
40664lipase+
40664lysine decarboxylase-4.1.1.18
40664ornithine decarboxylase+4.1.1.17
40664protease+
40664tryptophan deaminase-
40664urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
40664-+++-+++++++-----+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
40664-------------------------------------------------+---------+------------+--++--++-+-----+++---+-+--

Isolation, sampling and environmental information

isolation

  • @ref: 40664
  • sample type: Human, Clinical isolate

Safety information

risk assessment

  • @ref: 40664
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Shewanella algae ATCC 49138GCA_019670525completencbi38313
66792Shewanella algae strain ATCC 4913838313.158completepatric38313

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes93.159no
gram-positiveno99.088no
anaerobicno94.602no
aerobicyes51.056no
halophileno59.012no
spore-formingno95.743no
motileyes94.537no
thermophileno99.564yes
glucose-utilyes90.905no
glucose-fermentno65.105no

External links

@ref: 40664

culture collection no.: CIP 103562, ATCC 49138

straininfo link

  • @ref: 95443
  • straininfo: 42316

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
40664Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103562Collection of Institut Pasteur (CIP 103562)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
95443Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID42316.1