Strain identifier

BacDive ID: 138785

Type strain: Yes

Species: Curvibacter lanceolatus

Strain Designation: 192

Strain history: CIP <- 1989, NCIB <- ATCC <- E. Leifson: strain 192

NCBI tax ID(s): 1265504 (strain), 86182 (species)

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General

@ref: 40591

BacDive-ID: 138785

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile

description: Curvibacter lanceolatus 192 is an aerobe, mesophilic, motile bacterium of the family Comamonadaceae.

NCBI tax id

NCBI tax idMatching level
1265504strain
86182species

strain history

@refhistory
67770IAM 14947 <-- ATCC 14669 <-- E. Leifson 192.
40591CIP <- 1989, NCIB <- ATCC <- E. Leifson: strain 192

doi: 10.13145/bacdive138785.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Curvibacter
  • species: Curvibacter lanceolatus
  • full scientific name: Curvibacter lanceolatus (Leifson 1962) Ding and Yokota 2004

  • synonyms

    • @ref: 20215
    • synonym: Pseudomonas lanceolata

@ref: 40591

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Curvibacter

species: Curvibacter lanceolatus

strain designation: 192

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes94.039
6948099.998negative
40591yesnegativerod-shaped

pigmentation

  • @ref: 40591
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
40591MEDIUM 18 - for Hydrogenophaga, Vogesella and Pseudomonas generayesDistilled water make up to (1000.000 ml);Sodium chloride (3.000 g);Agar(12.000 g);Yeast extract (3.000 g);Peptone (0.600 g)
40591CIP Medium 18yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=18

culture temp

@refgrowthtypetemperaturerange
40591positivegrowth25mesophilic
58019positivegrowth26mesophilic
67770positivegrowth25mesophilic
40591positivegrowth25-37mesophilic
40591nogrowth5psychrophilic
40591nogrowth10psychrophilic
40591nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 58019
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.998

halophily

@refsaltgrowthtested relationconcentration
40591NaClpositivegrowth0 %
40591NaClnogrowth2 %
40591NaClnogrowth4 %
40591NaClnogrowth6 %
40591NaClnogrowth8 %
40591NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
40591citrate-carbon source16947
40591esculin-hydrolysis4853
40591nitrate+reduction17632
40591nitrite-reduction16301
40591nitrate-respiration17632

antibiotic resistance

  • @ref: 40591
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 40591
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
40591oxidase+
40591beta-galactosidase-3.2.1.23
40591alcohol dehydrogenase-1.1.1.1
40591gelatinase-
40591catalase+1.11.1.6
40591lysine decarboxylase-4.1.1.18
40591ornithine decarboxylase-4.1.1.17
40591tryptophan deaminase-
40591urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
40591-+++-+-+--++--------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
40591-------------------------------------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
40591-------------------------------+---------------------------+---------------------------------------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
40591VancouverCanadaCANNorth America
58019VancouverCanadaCANNorth AmericaDistilled water
67770Vancouver, British ColumbiaCanadaCANNorth AmericaDistilled water
40591VancouverCanadaCANNorth AmericaEnvironment, Distilled water

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic
#Engineered#Industrial#Engineered product
#Engineered#Treatment#Sterilized (Desinfected)

Safety information

risk assessment

  • @ref: 40591
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Curvibacter lanceolatus gene for 16S rRNA, strain: ATCC 14669
  • accession: AB021390
  • length: 1508
  • database: ena
  • NCBI tax ID: 86182

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Curvibacter lanceolatus ATCC 146691265504.3wgspatric1265504
66792Curvibacter lanceolatus ATCC 146692519103180draftimg1265504
67770Curvibacter lanceolatus ATCC 14669GCA_000381265scaffoldncbi1265504

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes88.619no
gram-positiveno98.681no
anaerobicno97.252yes
aerobicyes84.784yes
halophileno97.497no
spore-formingno94.225no
glucose-utilyes54.404no
flagellatedyes70.362no
thermophileno99.266no
glucose-fermentno89.526no

External links

@ref: 40591

culture collection no.: CIP 103297, ATCC 14669, NCIMB 9461, CCUG 48175, IAM 14947, CFBP 5587, JCM 21429, BCRC 15829, LMG 21631, NBRC 103051

straininfo link

  • @ref: 95438
  • straininfo: 277604

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
40591Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103297Collection of Institut Pasteur (CIP 103297)
58019Curators of the CCUGhttps://www.ccug.se/strain?id=48175Culture Collection University of Gothenburg (CCUG) (CCUG 48175)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
95438Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID277604.1