Strain identifier
BacDive ID: 13871
Type strain: 
Species: Rhodobium orientis
Strain history: A. Hiraishi MB303.
NCBI tax ID(s): 34017 (species)
version 8.1 (current version)
General
@ref: 4309
BacDive-ID: 13871
DSM-Number: 11349
keywords: Bacteria, anaerobe, mesophilic
description: Rhodobium orientis DSM 11349 is an anaerobe, mesophilic bacterium that was isolated from coastal seawater.
NCBI tax id
- NCBI tax id: 34017
- Matching level: species
strain history
| @ref | history |
|---|---|
| 4309 | <- JCM <- A. Hiraishi, MB 303 |
| 67770 | A. Hiraishi MB303. |
doi: 10.13145/bacdive13871.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhodobiaceae
- genus: Rhodobium
- species: Rhodobium orientis
- full scientific name: Rhodobium orientis Hiraishi et al. 1995
@ref: 4309
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Rhodobiaceae
genus: Rhodobium
species: Rhodobium orientis
full scientific name: Rhodobium orientis Hiraishi et al. 1995 emend. Urdiain et al. 2008
type strain: no
Culture and growth conditions
culture medium
- @ref: 4309
- name: RHODOBIUM MEDIUM (DSMZ Medium 745)
- growth: yes
- link: https://mediadive.dsmz.de/medium/745
- composition: Name: RHODOBIUM MEDIUM (DSMZ Medium 745) Composition: NaCl 50.2 g/l Na-DL-malate 3.6 g/l Yeast extract 1.0 g/l KH2PO4 1.0 g/l (NH4)2SO4 1.0 g/l Na2S2O3 x 5 H2O 0.5 g/l MgCl2 x 6 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l Na2-EDTA 0.0052 g/l FeCl2 x 4 H2O 0.0015 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l H3BO3 6.2e-05 g/l Na2MoSO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l CuCl2 x 2 H2O 1.7e-05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 4309 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 4309
- oxygen tolerance: anaerobe
observation
- @ref: 67770
- observation: quinones: Q-10, MK-10
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 4309 | coastal seawater | Goto Island | Japan | JPN | Asia |
| 67770 | Coastal seawater | Goto Island | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Terrestrial | #Coast |
Safety information
risk assessment
- @ref: 4309
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
GC content
- @ref: 4309
- GC-content: 65.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 4309
culture collection no.: DSM 11349, JCM 9338
straininfo link
- @ref: 83047
- straininfo: 49083
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4309 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11349) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11349 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 83047 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49083.1 | StrainInfo: A central database for resolving microbial strain identifiers |