Strain identifier

BacDive ID: 138664

Type strain: Yes

Species: Haemophilus piscium

Strain Designation: 16

Strain history: CIP <- 1999, CCUG <- ATCC, Rockville, USA <- S.F. Snieszko: strain 16

NCBI tax ID(s): 80746 (species)

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General

@ref: 40292

BacDive-ID: 138664

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Haemophilus piscium 16 is a mesophilic, Gram-negative, rod-shaped bacterium of the family Pasteurellaceae.

NCBI tax id

  • NCBI tax id: 80746
  • Matching level: species

strain history

  • @ref: 40292
  • history: CIP <- 1999, CCUG <- ATCC, Rockville, USA <- S.F. Snieszko: strain 16

doi: 10.13145/bacdive138664.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Haemophilus
  • species: Haemophilus piscium
  • full scientific name: Haemophilus piscium corrig. Snieszko et al. 1950 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Hemophilus piscium

@ref: 40292

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Haemophilus

species: Haemophilus piscium

strain designation: 16

type strain: yes

Morphology

cell morphology

  • @ref: 40292
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 40292

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
40292MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
40292CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperature
40292positivegrowth25
40292positivegrowth15-30
40292nogrowth37
40292nogrowth41
40292nogrowth45

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837430911sorbitol-builds acid from
6837417057cellobiose-builds acid from
6837462345L-rhamnose-builds acid from
6837427082trehalose+builds acid from
6837418333D-arabitol-builds acid from
6837417634D-glucose+builds acid from
6837415963ribitol-builds acid from
6837417306maltose-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837418024D-galacturonic acid-builds acid from
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837425094lysine-degradation
6837418257ornithine-degradation
6837429016arginine-hydrolysis
402924853esculin-hydrolysis
40292606565hippurate-hydrolysis
4029217632nitrate-reduction
4029216301nitrite-reduction
68371Potassium 5-ketogluconate-builds acid from
6837127613amygdalin-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837417268myo-inositol-builds acid from
6837430849L-arabinose-builds acid from
6837417992sucrose+builds acid from
6837427897tryptophan-energy source
6837415792malonate-assimilation
6837418394palatinose-builds acid from
6837416899D-mannitol-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose+builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen+builds acid from
6837128017starch+builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837159640N-acetylglucosamine-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

antibiotic resistance

  • @ref: 40292
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6837435581indoleno
4029235581indoleno

metabolite tests

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase+3.1.3.2
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382alkaline phosphatase+3.1.3.1
40292oxidase-
40292beta-galactosidase-3.2.1.23
40292alcohol dehydrogenase-1.1.1.1
40292catalase-1.11.1.6
40292gamma-glutamyltransferase-2.3.2.2
40292lysine decarboxylase-4.1.1.18
40292ornithine decarboxylase-4.1.1.17
40292urease-3.5.1.5
68374alpha-maltosidase-
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase-3.2.1.23
68382alpha-fucosidase-3.2.1.51
68382alpha-chymotrypsin-3.4.21.1
68382esterase (C 4)+
68374L-aspartate arylamidase-3.4.11.21
68374alpha-galactosidase-3.2.1.22
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase+
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase-4.1.1.17

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
40292-+++-+----+----+-+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
40292---------++++-------------+/-+--++---++--+---------

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
65640-------+-----------++----+------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
40292---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
40292West VirginiaUSAUSANorth America
40292West VirginiaUnited States of AmericaUSANorth AmericaTrout, ulcer

Safety information

risk assessment

  • @ref: 40292
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 124043
  • description: Haemophilus piscium strain CIP 106116 16S ribosomal RNA gene, complete sequence.
  • accession: JN175340
  • length: 1534
  • database: nuccore
  • NCBI tax ID: 80746

External links

@ref: 40292

culture collection no.: CIP 106116, ATCC 10801, CCUG 15943

straininfo link

  • @ref: 95340
  • straininfo: 35284

literature

  • topic: Phylogeny
  • Pubmed-ID: 2223605
  • title: Inter- and intrafamilial similarities of rRNA cistrons of the Pasteurellaceae.
  • authors: De Ley J, Mannheim W, Mutters R, Piechulla K, Tytgat R, Segers P, Bisgaard M, Frederiksen W, Hinz KH, Vanhoucke M
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-40-2-126
  • year: 1990
  • mesh: Actinobacillus/classification/genetics, DNA, Bacterial/*metabolism, *Genes, Haemophilus/classification/genetics, Nucleic Acid Hybridization, Pasteurella/classification/genetics, Pasteurellaceae/*classification/genetics, RNA, Ribosomal/*metabolism, Terminology as Topic
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
40292Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106116Collection of Institut Pasteur (CIP 106116)
65640Curators of the CCUGhttps://www.ccug.se/strain?id=15943Culture Collection University of Gothenburg (CCUG) (CCUG 15943)
68371Automatically annotated from API 50CH acid
68374Automatically annotated from API ID32E
68382Automatically annotated from API zym
95340Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID35284.1
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy