Strain identifier
BacDive ID: 13860
Type strain: 
Species: Jhaorihella thermophila
Strain Designation: CC-MHSW-1
Strain history: C.-C. Young CC-MHSW-1.
NCBI tax ID(s): 488547 (species)
version 8.1 (current version)
General
@ref: 16852
BacDive-ID: 13860
DSM-Number: 23413
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Jhaorihella thermophila CC-MHSW-1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from coastal hot spring on a volcanic island.
NCBI tax id
- NCBI tax id: 488547
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16852 | <- P. Kämpfer, Univ. Giessen, Germany; CC-MHSW-1 <- A. B. Arun, Yenepoya Univ., Mangalore, India |
| 67770 | C.-C. Young CC-MHSW-1. |
doi: 10.13145/bacdive13860.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Jhaorihella
- species: Jhaorihella thermophila
- full scientific name: Jhaorihella thermophila Rekha et al. 2011
@ref: 16852
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Jhaorihella
species: Jhaorihella thermophila
full scientific name: Jhaorihella thermophila Rekha et al. 2011
strain designation: CC-MHSW-1
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.999
colony morphology
- @ref: 62002
- incubation period: 3 days
Culture and growth conditions
culture medium
- @ref: 16852
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16852 | positive | growth | 28 | mesophilic |
| 62002 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 62002
- oxygen tolerance: aerobe
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.994
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude | sampling date |
|---|---|---|---|---|---|---|---|---|
| 16852 | coastal hot spring on a volcanic island | Green Island (Lutao), located off Taituang (22° 39' N 121° 29' E) | Taiwan | TWN | Asia | 22.65 | 121.483 | |
| 62002 | Coastal hot spring | Lutao,Green Island | Taiwan | TWN | Asia | 2008-06-25 | ||
| 67770 | Coastal hot spring on Green Island (Lutao) | located off Taituang | Taiwan | TWN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Environmental | #Terrestrial | #Volcanic |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_59523.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_26280;97_32976;98_42317;99_59523&stattab=map
- Last taxonomy: Jhaorihella thermophila subclade
- 16S sequence: EU287912
- Sequence Identity:
- Total samples: 751
- soil counts: 115
- aquatic counts: 566
- animal counts: 64
- plant counts: 6
Safety information
risk assessment
- @ref: 16852
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16852
- description: Jhaorihella thermophila strain CC-MHSW-1 16S ribosomal RNA gene, partial sequence
- accession: EU287912
- length: 1400
- database: ena
- NCBI tax ID: 488547
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Jhaorihella thermophila strain DSM 23413 | 488547.3 | wgs | patric | 488547 |
| 66792 | Jhaorihella thermophila DSM 23413 | 2675903694 | draft | img | 488547 |
| 67770 | Jhaorihella thermophila DSM 23413 | GCA_900108275 | scaffold | ncbi | 488547 |
GC content
- @ref: 16852
- GC-content: 64.7
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 67 | no |
| gram-positive | no | 98.415 | no |
| anaerobic | no | 94.344 | no |
| halophile | yes | 69.117 | no |
| spore-forming | no | 95.551 | no |
| glucose-util | yes | 51.629 | no |
| aerobic | yes | 76.934 | yes |
| thermophile | no | 80.137 | no |
| motile | no | 62.001 | no |
| flagellated | no | 87.231 | no |
| glucose-ferment | no | 91.932 | no |
External links
@ref: 16852
culture collection no.: DSM 23413, CCM 7767, JCM 15068, CCUG 59509
straininfo link
- @ref: 83036
- straininfo: 406260
literature
- topic: Phylogeny
- Pubmed-ID: 20656808
- title: Jhaorihella thermophila gen. nov., sp. nov., a moderately thermophilic bacterium isolated from a coastal hot spring.
- authors: Rekha PD, Young CC, Kampfer P, Martin K, Arun AB, Chen WM, Lai WA, Chao JH, Shen FT
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.025817-0
- year: 2010
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hot Springs/*microbiology, Islands, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Taiwan, Ubiquinone/chemistry, Water Microbiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 16852 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23413) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23413 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 62002 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 59509) | https://www.ccug.se/strain?id=59509 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 83036 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406260.1 | StrainInfo: A central database for resolving microbial strain identifiers |