Strain identifier

BacDive ID: 138574

Type strain: Yes

Species: Oceanimonas smirnovii

Strain Designation: Ivanova 31-13, 31-13

Strain history: CIP <- 2005, E. Ivanova, Swinburne Univ., Victoria, Australia: strain 31-13

NCBI tax ID(s): 1279015 (strain), 264574 (species)

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General

@ref: 64686

BacDive-ID: 138574

DSM-Number: 108803

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Oceanimonas smirnovii Ivanova 31-13 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Aeromonadaceae.

NCBI tax id

NCBI tax idMatching level
264574species
1279015strain

strain history

@refhistory
64686<- LMG; LMG 22147 <- E. Ivanova, Swinburne Univ. Technol., IRIS, Hawthorn, Australia; Ivanova 31-13 <- O. Onishchenko, Inst. of Microbiology and Virology, Ukraine Acadamy of Sciences, Ukraine; UCM B-11076
40130CIP <- 2005, E. Ivanova, Swinburne Univ., Victoria, Australia: strain 31-13

doi: 10.13145/bacdive138574.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Oceanimonas
  • species: Oceanimonas smirnovii
  • full scientific name: Oceanimonas smirnovii Ivanova et al. 2005

@ref: 64686

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Oceanimonas

species: Oceanimonas smirnovii

full scientific name: Oceanimonas smirnovii Ivanova et al. 2005

strain designation: Ivanova 31-13, 31-13

type strain: yes

Morphology

cell morphology

  • @ref: 40130
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 40130

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
64686MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)yeshttps://mediadive.dsmz.de/medium/514fName: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f) Composition: NaCl 19.4 g/l Agar 15.0 g/l MgCl2 8.8 g/l Peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
64686HALF STRENGTH BACTO MARINE BROTH (DSMZ Medium 514a)yeshttps://mediadive.dsmz.de/medium/514aName: HALF STRENGTH BACTO MARINE BROTH (DSMZ Medium 514a) Composition: Agar 15.0 g/l NaCl 9.725 g/l MgCl2 2.95 g/l Bacto peptone 2.5 g/l Na2SO4 1.62 g/l CaCl2 0.9 g/l Yeast extract 0.5 g/l KCl 0.275 g/l NaHCO3 0.08 g/l Fe(III) citrate 0.05 g/l KBr 0.04 g/l SrCl2 0.017 g/l H3BO3 0.011 g/l Na2HPO4 0.004 g/l Na-silicate 0.002 g/l NaF 0.0012 g/l (NH4)NO3 0.0008 g/l Distilled water
40130Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
40130CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
40130CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperature
64686positivegrowth28
40130positivegrowth25

Physiology and metabolism

oxygen tolerance

  • @ref: 40130
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4013017632nitrate+reduction
4013016301nitrite-reduction
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
4013035581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
40130oxidase+
40130alcohol dehydrogenase-1.1.1.1
40130catalase+1.11.1.6
40130lysine decarboxylase-4.1.1.18
40130ornithine decarboxylase-4.1.1.17
40130urease-3.5.1.5
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
40130-++--++---++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
64686+----------------+--+

Isolation, sampling and environmental information

isolation

@refgeographic locationsample typecountryorigin.countrycontinentlatitudelongitude
40130Black sea
64686Black Sea coastal line, Karadag Natural Reserve of the Eastern Crimea (44° 56' N, 35° 13' E')seawaterUkraineUKREurope44.933335.2167
40130Eastern CrimeaEnvironment, Seawater sampleBlack Sea

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_84803.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_2774;97_3412;98_4308;99_84803&stattab=map
  • Last taxonomy: Oceanimonas sp.
  • 16S sequence: AY538714
  • Sequence Identity:
  • Total samples: 15
  • aquatic counts: 3
  • animal counts: 12

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
646861Risk group (German classification)
401301Risk group (French classification)

Sequence information

16S sequences

  • @ref: 64686
  • description: Oceanimonas smirnovii 16S ribosomal RNA gene, partial sequence
  • accession: AY538714
  • length: 1540
  • database: nuccore
  • NCBI tax ID: 264574

External links

@ref: 64686

culture collection no.: CIP 109080, UCM B-11076, LMG 22147, ATCC BAA-899, DSM 108803

straininfo link

  • @ref: 95267
  • straininfo: 127832

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15830805Oceanimonas smirnovii sp. nov., a novel organism isolated from the Black Sea.Ivanova EP, Onyshchenko OM, Christen R, Zhukova NV, Lysenko AM, Shevchenko LS, Buljan V, Hambly B, Kiprianova EASyst Appl Microbiol10.1016/j.syapm.2004.11.0022005Aeromonadaceae/chemistry/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, UkraineGenetics
Phylogeny30040062Oceanimonas marisflavi sp. nov., a polycyclic aromatic hydrocarbon-degrading marine bacterium.Lee DW, Lee H, Kwon BO, Khim JS, Yim UH, Park H, Park B, Choi IG, Kim BS, Kim JJInt J Syst Evol Microbiol10.1099/ijsem.0.0029322018Aeromonadaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/microbiology, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, Polycyclic Aromatic Hydrocarbons/*metabolism, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
40130Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109080Collection of Institut Pasteur (CIP 109080)
64686Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-108803Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 108803)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
95267Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID127832.1