Strain identifier

BacDive ID: 138562

Type strain: No

Species: Acinetobacter baumannii

Strain Designation: 7788

Strain history: CIP <- 1970, ATCC <- CDC: strain 7788 <- E. Kass: strain 13860, Mima anitrata, Herellea vaginicola

NCBI tax ID(s): 470 (species)

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General

@ref: 40088

BacDive-ID: 138562

keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Acinetobacter baumannii 7788 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Blood culture.

NCBI tax id

  • NCBI tax id: 470
  • Matching level: species

strain history

  • @ref: 40088
  • history: CIP <- 1970, ATCC <- CDC: strain 7788 <- E. Kass: strain 13860, Mima anitrata, Herellea vaginicola

doi: 10.13145/bacdive138562.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter baumannii
  • full scientific name: Acinetobacter baumannii Bouvet and Grimont 1986

@ref: 40088

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter baumannii

strain designation: 7788

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
125438negative98.5
40088negativerod-shapedno

colony morphology

  • @ref: 40088

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
40088MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
40088CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
40088positivegrowth30
40088positivegrowth25-45
40088nogrowth10

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
40088obligate aerobe
125438aerobe90.316
125439obligate aerobe99

spore formation

  • @ref: 125438
  • spore formation: no
  • confidence: 93.027

halophily

@refsaltgrowthtested relationconcentration
40088NaClpositivegrowth0-4 %
40088NaClnogrowth6 %
40088NaClnogrowth8 %
40088NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4008816947citrate+carbon source
4008817632nitrate-reduction
4008816301nitrite-reduction
4008817234glucose+/-degradation
4008817632nitrate-respiration

antibiotic resistance

  • @ref: 40088
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
4008815688acetoin-
4008817234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
40088oxidase-
40088beta-galactosidase-3.2.1.23
40088gelatinase-
40088catalase+1.11.1.6
40088gamma-glutamyltransferase+2.3.2.2
40088urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
40088-+++-+----++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
40088+------------------+++---------------------+----++++++-------++++--+--+-++-+++++++------++++++-++++

Isolation, sampling and environmental information

isolation

  • @ref: 40088
  • sample type: Blood culture

Safety information

risk assessment

  • @ref: 40088
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter baumannii ATCC 17961GCA_015910475completencbi470
66792Acinetobacter baumannii ATCC 17961470.2202wgspatric470
66792Acinetobacter baumannii strain ATCC 17961470.12449completepatric470

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno98.5no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no98.289no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes90.316yes
125438spore-formingspore-formingAbility to form endo- or exosporesno93.027no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno100no
125438motile2+flagellatedAbility to perform flagellated movementno76.916no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno84.5
125439BacteriaNetmotilityAbility to perform movementyes52.4
125439BacteriaNetgram_stainReaction to gram-stainingnegative75.1
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe99

External links

@ref: 40088

culture collection no.: CIP 70.32, ATCC 17961

straininfo link

  • @ref: 95256
  • straininfo: 14512

literature

Pubmed-IDtitleauthorsjournalDOIyearmeshtopictopic2
19187931The structure of the polysaccharide O-chain of the LPS from Acinetobacter baumannii strain ATCC 17961.MacLean LL, Perry MB, Chen W, Vinogradov ECarbohydr Res10.1016/j.carres.2008.12.0262009Acetylgalactosamine/chemistry, Acetylglucosamine/chemistry, Acinetobacter baumannii/*chemistry, Carbohydrate Conformation, Carbohydrate Sequence, Galactose/chemistry, Glucose/chemistry, Glucuronates/chemistry, Magnetic Resonance Spectroscopy, Mass Spectrometry, Molecular Structure, O Antigens/*chemistry
21463855Identification and structural determination of the capsular polysaccharides from two Acinetobacter baumannii clinical isolates, MG1 and SMAL.Fregolino E, Gargiulo V, Lanzetta R, Parrilli M, Holst O, Castro CDCarbohydr Res10.1016/j.carres.2011.03.0242011Acinetobacter Infections/microbiology, Acinetobacter baumannii/*chemistry/immunology, Carbohydrate Sequence, Gas Chromatography-Mass Spectrometry, Molecular Sequence Data, O Antigens/chemistry, Polysaccharides, Bacterial/chemistry/*isolation & purificationGeneticsEnzymology
23614627Biscatecholate-monohydroxamate mixed ligand siderophore-carbacephalosporin conjugates are selective sideromycin antibiotics that target Acinetobacter baumannii.Wencewicz TA, Miller MJJ Med Chem10.1021/jm400265k2013Acinetobacter Infections/microbiology, Acinetobacter baumannii/*drug effects, Agar, Anti-Bacterial Agents/*chemical synthesis/*pharmacology, Cephalosporins/*chemistry/*pharmacology, Culture Media, Ferrous Compounds/*chemical synthesis/*pharmacology, Indicators and Reagents, Iron/chemistry, Microbial Sensitivity Tests, Peptides/*chemical synthesis/*pharmacology, Topoisomerase II InhibitorsCultivationPathogenicity
33707317Genome Sequences for Two Acinetobacter baumannii Strains Obtained Using the Unicycler Hybrid Assembly Pipeline.Farrow JM 3rd, Pesci EC, Slade DJMicrobiol Resour Announc10.1128/MRA.00017-212021Genetics
34730379CsrA Coordinates Compatible Solute Synthesis in Acinetobacter baumannii and Facilitates Growth in Human Urine.Hubloher JJ, Schabacker K, Muller V, Averhoff BMicrobiol Spectr10.1128/Spectrum.01296-212021Acinetobacter baumannii/genetics/*growth & development, Adaptation, Physiological/*genetics, Bacterial Proteins/*genetics/metabolism, Gene Deletion, Humans, Osmotic Pressure/*physiology, Repressor Proteins/genetics/metabolism, Transcription Factors/genetics/metabolism, Urine/*microbiologyMetabolismPathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
40088Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2070.32Collection of Institut Pasteur (CIP 70.32)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
95256Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID14512.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG