Strain identifier

BacDive ID: 13854

Type strain: Yes

Species: Mameliella alba

Strain Designation: JLT354-W

Strain history: <- LMG <- N.-Z. Jiao <- Q. Zheng, Xiamen Univ., State Key Lab. of Marine Env. Science, China <- K. Wang

NCBI tax ID(s): 561184 (species)

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General

@ref: 18208

BacDive-ID: 13854

DSM-Number: 26384

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Mameliella alba JLT354-W is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 561184
  • Matching level: species

strain history

  • @ref: 18208
  • history: <- LMG <- N.-Z. Jiao <- Q. Zheng, Xiamen Univ., State Key Lab. of Marine Env. Science, China <- K. Wang

doi: 10.13145/bacdive13854.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Mameliella
  • species: Mameliella alba
  • full scientific name: Mameliella alba Zheng et al. 2010

  • synonyms

    @refsynonym
    20215Mameliella phaeodactyli
    20215Mameliella atlantica
    20215Ponticoccus lacteus
    20215Alkalimicrobium pacificum

@ref: 18208

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Mameliella

species: Mameliella alba

full scientific name: Mameliella alba Zheng et al. 2010 emend. Liu et al. 2018

strain designation: JLT354-W

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29353negative2.6 µm0.8 µmrod-shapedno
69480negative99.999

colony morphology

  • @ref: 18208
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

  • @ref: 18208
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18208positivegrowth30mesophilic
29353positivegrowth10-30
29353positiveoptimum25mesophilic

culture pH

@refabilitytypepHPH range
29353positivegrowth06-09alkaliphile
29353positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 29353
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.989

halophily

@refsaltgrowthtested relationconcentration
29353NaClpositivegrowth01-10 %
29353NaClpositiveoptimum1.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2935330089acetate+carbon source
2935316449alanine+carbon source
2935329016arginine+carbon source
2935317057cellobiose+carbon source
2935316947citrate+carbon source
2935317234glucose+carbon source
2935317754glycerol+carbon source
2935324996lactate+carbon source
2935325115malate+carbon source
2935315792malonate+carbon source
2935317306maltose+carbon source
2935329864mannitol+carbon source
2935317268myo-inositol+carbon source
2935330911sorbitol+carbon source
2935317992sucrose+carbon source
2935318222xylose+carbon source
2935317632nitrate+reduction
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
18208catalase+1.11.1.6
18208cytochrome-c oxidase+1.9.3.1
29353catalase+1.11.1.6
29353cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18208-+-++/-+++/---+/-+/---------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
18208+----+--+++/-+-++-++++
18208+----+--+++/-+-++-++++

Isolation, sampling and environmental information

isolation

  • @ref: 18208
  • sample type: seawater
  • geographic location: South China Sea
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_4629.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_2304;97_2798;98_3475;99_4629&stattab=map
  • Last taxonomy: Mameliella alba subclade
  • 16S sequence: EU734592
  • Sequence Identity:
  • Total samples: 4750
  • soil counts: 225
  • aquatic counts: 3972
  • animal counts: 519
  • plant counts: 34

Safety information

risk assessment

  • @ref: 18208
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18208
  • description: Mameliella alba strain JLT354-W 16S ribosomal RNA gene, partial sequence
  • accession: EU734592
  • length: 1409
  • database: ena
  • NCBI tax ID: 561184

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mameliella alba DSM 26384GCA_003051025contigncbi561184
66792Mameliella alba CGMCC 1.7290GCA_900101505scaffoldncbi561184
66792Mameliella alba strain CGMCC 1.7290561184.4wgspatric561184
66792Mameliella alba strain DSM 26384561184.7wgspatric561184
66792Mameliella alba DSM 263842593339298draftimg561184
66792Mameliella alba CGMCC 1.72902663762746draftimg561184

GC content

  • @ref: 29353
  • GC-content: 63.7

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno58.122yes
flagellatedno81.373no
gram-positiveno98.828yes
anaerobicno96.192yes
aerobicyes89.478yes
halophileyes74.333no
spore-formingno95.531no
glucose-fermentno90.339yes
thermophileno98.055yes
glucose-utilyes91.888yes

External links

@ref: 18208

culture collection no.: DSM 26384, CGMCC 1.7290, LMG 24665

straininfo link

  • @ref: 83030
  • straininfo: 356189

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19661508Mameliella alba gen. nov., sp. nov., a marine bacterium of the Roseobacter clade in the order Rhodobacterales.Zheng Q, Chen C, Yan XJ, Wang YN, Zeng YH, Hao LK, He WH, Jiao NZInt J Syst Evol Microbiol10.1099/ijs.0.011437-02009Bacterial Typing Techniques, Base Composition, China, DNA, Ribosomal/analysis/genetics, Fatty Acids/analysis, Genes, rRNA, Hydroxybutyrates/*metabolism, Molecular Sequence Data, Phenotype, Phylogeny, Polyesters/*metabolism, RNA, Ribosomal, 16S/genetics, Roseobacter/*classification/genetics/isolation & purification/physiology, Seawater/*microbiology, Sequence Analysis, DNA, Species SpecificityMetabolism
Phylogeny25866025Mameliella atlantica sp. nov., a marine bacterium of the Roseobacter clade isolated from deep-sea sediment of the South Atlantic Ocean.Xu H, Jiang L, Li S, Zeng X, Shao ZInt J Syst Evol Microbiol10.1099/ijs.0.0002482015Atlantic Ocean, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryGenetics
Phylogeny26977734Maliponia aquimaris gen. nov., sp. nov., isolated from seawater.Jung YT, Lee JS, Yoon JHInt J Syst Evol Microbiol10.1099/ijsem.0.0010212016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistryTranscriptome
Phylogeny29488862Reclassification of Mameliella phaeodactyli, Mameliella atlantica, Ponticoccus lacteus and Alkalimicrobium pacificum as later heterotypic synonyms of Mameliella alba and an emended description of Mameliella alba.Liu Y, Zhang X, Lai Q, Shao ZInt J Syst Evol Microbiol10.1099/ijsem.0.0026172018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification, Sequence Analysis, DNATranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
18208Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26384)https://www.dsmz.de/collection/catalogue/details/culture/DSM-26384
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29353Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2576528776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83030Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID356189.1StrainInfo: A central database for resolving microbial strain identifiers