Strain identifier

BacDive ID: 138532

Type strain: No

Species: Vibrio gallicus

Strain Designation: HT 2-6

Strain history: CIP <- 2003, T. Sawabe, Hokodate, Japan: strain HT 2-6

NCBI tax ID(s): 190897 (species)

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General

@ref: 39955

BacDive-ID: 138532

keywords: Bacteria, mesophilic, Gram-negative, oval-shaped

description: Vibrio gallicus HT 2-6 is a mesophilic, Gram-negative, oval-shaped bacterium of the family Vibrionaceae.

NCBI tax id

  • NCBI tax id: 190897
  • Matching level: species

strain history

  • @ref: 39955
  • history: CIP <- 2003, T. Sawabe, Hokodate, Japan: strain HT 2-6

doi: 10.13145/bacdive138532.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio gallicus
  • full scientific name: Vibrio gallicus Sawabe et al. 2004

@ref: 39955

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio gallicus

strain designation: HT 2-6

type strain: no

Morphology

cell morphology

  • @ref: 39955
  • gram stain: negative
  • cell shape: oval-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39955Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
39955CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
39955positivegrowth25mesophilic
39955positivegrowth15-25psychrophilic
39955nogrowth5psychrophilic
39955nogrowth30mesophilic
39955nogrowth37mesophilic
39955nogrowth41thermophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
39955NaClpositivegrowth2-4 %
39955NaClnogrowth0 %
39955NaClnogrowth6 %
39955NaClnogrowth8 %
39955NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
39955citrate-carbon source16947
39955esculin-hydrolysis4853
39955nitrate+reduction17632
39955nitrite-reduction16301
39955glucose-degradation17234

metabolite production

  • @ref: 39955
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3995515688acetoin-
3995517234glucose+

enzymes

@refvalueactivityec
39955oxidase+
39955beta-galactosidase-3.2.1.23
39955alcohol dehydrogenase-1.1.1.1
39955gelatinase-
39955amylase-
39955caseinase-3.4.21.50
39955catalase-1.11.1.6
39955gamma-glutamyltransferase-2.3.2.2
39955lecithinase-
39955lipase-
39955lysine decarboxylase-4.1.1.18
39955ornithine decarboxylase-4.1.1.17
39955phenylalanine ammonia-lyase-4.3.1.24
39955protease-
39955tryptophan deaminase-
39955urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39955-+++-+----++-----+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
39955----+----+/-+++----+---+-----+-------+/-+/----------+/---

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
39955RoscoffFranceFRAEurope
39955RoscoffFranceFRAEuropeAnimal, Abalone, gut2001

Safety information

risk assessment

  • @ref: 39955
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 39955

culture collection no.: CIP 107866

straininfo link

  • @ref: 95236
  • straininfo: 97548

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39955Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107866Collection of Institut Pasteur (CIP 107866)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
95236Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID97548.1