Strain identifier

BacDive ID: 138527

Type strain: Yes

Species: Planococcus alkanoclasticus

Strain Designation: MAE 2

Strain history: CIP <- 2002, NCIMB <- R. P. J. Swannell: strain MAE 2

NCBI tax ID(s): 71171 (species)

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General

@ref: 39931

BacDive-ID: 138527

keywords: Bacteria, psychrophilic, Gram-positive, rod-shaped

description: Planococcus alkanoclasticus MAE 2 is a psychrophilic, Gram-positive, rod-shaped bacterium of the family Caryophanaceae.

NCBI tax id

  • NCBI tax id: 71171
  • Matching level: species

strain history

  • @ref: 39931
  • history: CIP <- 2002, NCIMB <- R. P. J. Swannell: strain MAE 2

doi: 10.13145/bacdive138527.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Planococcus
  • species: Planococcus alkanoclasticus
  • full scientific name: Planococcus alkanoclasticus Engelhardt et al. 2001

  • synonyms

    • @ref: 20215
    • synonym: Planomicrobium alkanoclasticum

@ref: 39931

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Planococcaceae

genus: Planomicrobium

species: Planomicrobium alkanoclasticum

strain designation: MAE 2

type strain: yes

Morphology

cell morphology

  • @ref: 39931
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 39931

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39931MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
39931CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
39931positivegrowth20psychrophilic
39931positivegrowth10-30
39931nogrowth37mesophilic
39931nogrowth41thermophilic
39931nogrowth45thermophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
39931NaClpositivegrowth2-6 %
39931NaClnogrowth0 %
39931NaClnogrowth8 %
39931NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
39931606565hippurate-hydrolysis
3993117632nitrate-reduction
3993116301nitrite-reduction

metabolite production

  • @ref: 39931
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 39931
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
39931oxidase-
39931beta-galactosidase+3.2.1.23
39931alcohol dehydrogenase-1.1.1.1
39931gelatinase-
39931amylase+
39931DNase-
39931caseinase+3.4.21.50
39931catalase+1.11.1.6
39931tween esterase-
39931gamma-glutamyltransferase-2.3.2.2
39931lecithinase-
39931lipase-
39931lysine decarboxylase-4.1.1.18
39931ornithine decarboxylase-4.1.1.17
39931phenylalanine ammonia-lyase-4.3.1.24
39931tryptophan deaminase-
39931urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39931-+++-+++++-+---++---

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
39931Bridgewater Bay, SomersetUnited KingdomGBREurope
39931Bridgewater bay, SomersetUnited KingdomGBREuropeEnvironment, Sandy beach sediment

Safety information

risk assessment

  • @ref: 39931
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 39931

culture collection no.: CIP 107718, NCIMB 13489

straininfo link

  • @ref: 95234
  • straininfo: 60911

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11168727Isolation and characterization of a novel hydrocarbon-degrading, Gram-positive bacterium, isolated from intertidal beach sediment, and description of Planococcus alkanoclasticus sp. nov.Engelhardt MA, Daly K, Swannell RP, Head IMJ Appl Microbiol10.1046/j.1365-2672.2001.01241.x2001Alkanes/*metabolism, Base Composition, Fatty Acids/analysis, Genes, rRNA, Geologic Sediments/*microbiology, Gram-Positive Bacteria/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Phenotype, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S, Seawater/*microbiology, Sequence Analysis, DNAGenetics
Phylogeny15774646Planomicrobium chinense sp. nov., isolated from coastal sediment, and transfer of Planococcus psychrophilus and Planococcus alkanoclasticus to Planomicrobium as Planomicrobium psychrophilum comb. nov. and Planomicrobium alkanoclasticum comb. nov.Dai X, Wang YN, Wang BJ, Liu SJ, Zhou YGInt J Syst Evol Microbiol10.1099/ijs.0.63340-02005Base Sequence, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Geologic Sediments/*microbiology, Gram-Positive Bacteria/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNAGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39931Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107718Collection of Institut Pasteur (CIP 107718)
68382Automatically annotated from API zym
95234Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID60911.1