Strain identifier
BacDive ID: 138525
Type strain:
Species: Histophilus somni
Strain Designation: 8917974
Strain history: CIP <- 2002, ATCC <- R.D. Walker, "Haemophilus somnus": strain 8917974
NCBI tax ID(s): 731 (species)
General
@ref: 39916
BacDive-ID: 138525
keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-negative, rod-shaped
description: Histophilus somni 8917974 is a microaerophile, mesophilic, Gram-negative bacterium of the family Pasteurellaceae.
NCBI tax id
- NCBI tax id: 731
- Matching level: species
strain history
- @ref: 39916
- history: CIP <- 2002, ATCC <- R.D. Walker, "Haemophilus somnus": strain 8917974
doi: 10.13145/bacdive138525.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Histophilus
- species: Histophilus somni
- full scientific name: Histophilus somni Angen et al. 2003
@ref: 39916
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Histophilus
species: Histophilus somni
strain designation: 8917974
type strain: no
Morphology
cell morphology
- @ref: 39916
- gram stain: negative
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 39916
- hemolysis ability: 1
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
39916 | MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml) | |
39916 | CIP Medium 10 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
39916 | positive | growth | 37 | mesophilic |
39916 | positive | growth | 25-41 | |
39916 | no | growth | 15 | psychrophilic |
39916 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 39916
- oxygen tolerance: microaerophile
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
39916 | 4853 | esculin | - | hydrolysis |
39916 | 606565 | hippurate | + | hydrolysis |
39916 | 17632 | nitrate | + | reduction |
39916 | 16301 | nitrite | - | reduction |
antibiotic resistance
- @ref: 39916
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: yes
- is resistant: no
metabolite production
- @ref: 39916
- Chebi-ID: 35581
- metabolite: indole
- production: yes
enzymes
@ref | value | activity | ec |
---|---|---|---|
39916 | oxidase | + | |
39916 | beta-galactosidase | - | 3.2.1.23 |
39916 | alcohol dehydrogenase | - | 1.1.1.1 |
39916 | catalase | + | 1.11.1.6 |
39916 | gamma-glutamyltransferase | - | 2.3.2.2 |
39916 | lysine decarboxylase | - | 4.1.1.18 |
39916 | ornithine decarboxylase | - | 4.1.1.17 |
39916 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | + | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
39916 | - | + | - | - | - | + | - | - | - | - | + | + | - | - | + | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | geographic location | country | origin.country | continent | sample type |
---|---|---|---|---|---|
39916 | Michigan | USA | USA | North America | |
39916 | Michigan | United States of America | USA | North America | Animal, Bovine |
Safety information
risk assessment
- @ref: 39916
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Histophilus somni ATCC 700025
- accession: GCA_023502925
- assembly level: contig
- database: ncbi
- NCBI tax ID: 731
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 96.919 | no |
gram-positive | no | 98.706 | no |
anaerobic | no | 97.294 | no |
aerobic | no | 94.063 | no |
halophile | yes | 65.049 | no |
spore-forming | no | 98.664 | no |
motile | no | 90.061 | no |
glucose-ferment | yes | 55.846 | no |
thermophile | no | 96.563 | no |
glucose-util | yes | 56.368 | no |
External links
@ref: 39916
culture collection no.: CIP 107676, ATCC 700025
straininfo link
- @ref: 95232
- straininfo: 43734
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
39916 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107676 | Collection of Institut Pasteur (CIP 107676) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68382 | Automatically annotated from API zym | |||
95232 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID43734.1 |