Strain identifier

BacDive ID: 138525

Type strain: No

Species: Histophilus somni

Strain Designation: 8917974

Strain history: CIP <- 2002, ATCC <- R.D. Walker, "Haemophilus somnus": strain 8917974

NCBI tax ID(s): 731 (species)

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General

@ref: 39916

BacDive-ID: 138525

keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-negative, rod-shaped

description: Histophilus somni 8917974 is a microaerophile, mesophilic, Gram-negative bacterium of the family Pasteurellaceae.

NCBI tax id

  • NCBI tax id: 731
  • Matching level: species

strain history

  • @ref: 39916
  • history: CIP <- 2002, ATCC <- R.D. Walker, "Haemophilus somnus": strain 8917974

doi: 10.13145/bacdive138525.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Histophilus
  • species: Histophilus somni
  • full scientific name: Histophilus somni Angen et al. 2003

@ref: 39916

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Histophilus

species: Histophilus somni

strain designation: 8917974

type strain: no

Morphology

cell morphology

  • @ref: 39916
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 39916
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39916MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and NeisseriayesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
39916CIP Medium 10yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10

culture temp

@refgrowthtypetemperaturerange
39916positivegrowth37mesophilic
39916positivegrowth25-41
39916nogrowth15psychrophilic
39916nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 39916
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
399164853esculin-hydrolysis
39916606565hippurate+hydrolysis
3991617632nitrate+reduction
3991616301nitrite-reduction

antibiotic resistance

  • @ref: 39916
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 39916
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

enzymes

@refvalueactivityec
39916oxidase+
39916beta-galactosidase-3.2.1.23
39916alcohol dehydrogenase-1.1.1.1
39916catalase+1.11.1.6
39916gamma-glutamyltransferase-2.3.2.2
39916lysine decarboxylase-4.1.1.18
39916ornithine decarboxylase-4.1.1.17
39916urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39916-+---+----++--+-----

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
39916MichiganUSAUSANorth America
39916MichiganUnited States of AmericaUSANorth AmericaAnimal, Bovine

Safety information

risk assessment

  • @ref: 39916
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Histophilus somni ATCC 700025
  • accession: GCA_023502925
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 731

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno96.919no
gram-positiveno98.706no
anaerobicno97.294no
aerobicno94.063no
halophileyes65.049no
spore-formingno98.664no
motileno90.061no
glucose-fermentyes55.846no
thermophileno96.563no
glucose-utilyes56.368no

External links

@ref: 39916

culture collection no.: CIP 107676, ATCC 700025

straininfo link

  • @ref: 95232
  • straininfo: 43734

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39916Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107676Collection of Institut Pasteur (CIP 107676)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
95232Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID43734.1