Strain identifier

BacDive ID: 138452

Type strain: No

Species: Enterobacter cancerogenus

Strain Designation: 2126-81

Strain history: CIP <- 1989, NCTC <- ATCC <- 1981, CDC: strain 2126-81 <- New-York State Hlth. Dept., USA

NCBI tax ID(s): 69218 (species)

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General

@ref: 39776

BacDive-ID: 138452

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Enterobacter cancerogenus 2126-81 is a mesophilic, motile bacterium that was isolated from Arm wound.

NCBI tax id

  • NCBI tax id: 69218
  • Matching level: species

strain history

@refhistory
67770Y. Kosako 85541 <-- R. Sakazaki 85003 <-- CDC 2126-81.
39776CIP <- 1989, NCTC <- ATCC <- 1981, CDC: strain 2126-81 <- New-York State Hlth. Dept., USA

doi: 10.13145/bacdive138452.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Enterobacter
  • species: Enterobacter cancerogenus
  • full scientific name: Enterobacter cancerogenus (Urosevic 1966) Dickey and Zumoff 1988

  • synonyms

    @refsynonym
    20215Enterobacter taylorae
    20215Erwinia cancerogena

@ref: 39776

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Enterobacter

species: Enterobacter cancerogenus

strain designation: 2126-81

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes96.374
6948099.995negative

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39776MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
39776CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
39776positivegrowth30mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.988

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis
6837418257ornithine+degradation
6837429016arginine+hydrolysis
6837425094lysine-degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid+builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol+builds acid from
6837417306maltose+builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate+assimilation
6837427897tryptophan-energy source
6837417634D-glucose+builds acid from
6837417992sucrose-builds acid from
6837430849L-arabinose+builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose+builds acid from
6837462345L-rhamnose+builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose-builds acid from
6837430911sorbitol-builds acid from

metabolite production

@refChebi-IDmetaboliteproduction
6837435581indoleno
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6837435581indole-
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase+3.2.1.21
68374lipase-
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase+3.5.3.6
68374ornithine decarboxylase+4.1.1.17
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
65624++-++----+-++--+--++-

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
65624++---+--++++---+--++-+---++-----

Isolation, sampling and environmental information

isolation

@refsample type
67770Arm wound
39776Human, Arm wound

taxonmaps

  • @ref: 69479
  • File name: preview.99_120.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_17;99_120&stattab=map
  • Last taxonomy: Enterobacteriaceae
  • 16S sequence: LC420099
  • Sequence Identity:
  • Total samples: 13334
  • soil counts: 615
  • aquatic counts: 1353
  • animal counts: 10132
  • plant counts: 1234

Safety information

risk assessment

  • @ref: 39776
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Enterobacter cancerogenus JCM 3943 gene for 16S ribosomal RNA, partial sequence
  • accession: LC420099
  • length: 1462
  • database: ena
  • NCBI tax ID: 69218

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Enterobacter cancerogenus strain NCTC1212669218.25wgspatric69218
67770Enterobacter cancerogenus NCTC12126GCA_900706785contigncbi69218

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.069no
anaerobicno95.881no
halophileno85.743no
spore-formingno94.061no
glucose-utilyes95.399no
thermophileno99.125yes
flagellatedno63.936no
motileyes88.503no
aerobicyes84.169no
glucose-fermentyes93.413yes

External links

@ref: 39776

culture collection no.: CIP 103356, ATCC 35317, CCUG 18765, JCM 3943, NCTC 12126, CCUG 25589, CDC 2126-81, HUT 8115, NBRC 105713

straininfo link

  • @ref: 95176
  • straininfo: 40991

literature

  • topic: Phylogeny
  • Pubmed-ID: 3968204
  • title: Escherichia fergusonii and Enterobacter taylorae, two new species of Enterobacteriaceae isolated from clinical specimens.
  • authors: Farmer JJ 3rd, Fanning GR, Davis BR, O'Hara CM, Riddle C, Hickman-Brenner FW, Asbury MA, Lowery VA 3rd, Brenner DJ
  • journal: J Clin Microbiol
  • DOI: 10.1128/jcm.21.1.77-81.1985
  • year: 1985
  • mesh: Aged, Animals, Anti-Bacterial Agents/pharmacology, DNA, Bacterial/genetics, Drug Resistance, Microbial, Enterobacter/*classification/drug effects/genetics/metabolism, Enterobacteriaceae/*classification, Escherichia/*classification/drug effects/genetics/metabolism, Female, Fermentation, Humans, Male, Microbial Sensitivity Tests, Middle Aged, Nucleic Acid Hybridization, Terminology as Topic
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39776Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103356Collection of Institut Pasteur (CIP 103356)
65624Curators of the CCUGhttps://www.ccug.se/strain?id=18765Culture Collection University of Gothenburg (CCUG) (CCUG 18765)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68374Automatically annotated from API ID32E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
95176Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID40991.1