Strain identifier

BacDive ID: 138449

Type strain: Yes

Species: Mycobacterium barrassiae

Strain Designation: N7

Strain history: CIP <- 2004, M. Drancourt, Timone Hosp., Marseille, France: strain N7

NCBI tax ID(s): 319709 (species)

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General

@ref: 39754

BacDive-ID: 138449

keywords: genome sequence, Bacteria, aerobe, mesophilic, rod-shaped

description: Mycobacterium barrassiae N7 is an aerobe, mesophilic, rod-shaped bacterium of the family Mycobacteriaceae.

NCBI tax id

  • NCBI tax id: 319709
  • Matching level: species

strain history

@refhistory
397542004, M. Drancourt, Hosp. La Timone, Marseille, France: strain N7
39754CIP <- 2004, M. Drancourt, Timone Hosp., Marseille, France: strain N7

doi: 10.13145/bacdive138449.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium barrassiae
  • full scientific name: Mycobacterium barrassiae Adékambi et al. 2006

@ref: 39754

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium barrassiae

strain designation: N7

type strain: yes

Morphology

cell morphology

  • @ref: 39754
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39754MEDIUM 93 - for Mycobacterium avium subsp. sylvaticumyesDistilled water make up to (900.000 ml);Glycerol (4.500 ml);Middlebrook7H10 agar (17.000 g);Middelbrook OADC enrichment (100.000 ml)
39754CIP Medium 93yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=93
39754CIP Medium 602yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=602

culture temp

@refgrowthtypetemperaturerange
39754positivegrowth30mesophilic
58855positivegrowth30mesophilic
39754positivegrowth22-30
39754nogrowth10psychrophilic
39754nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
58855aerobe
39754obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
39754606565hippurate-hydrolysis
3975417632nitrate+reduction
3975416301nitrite-reduction
3975417632nitrate-respiration

antibiotic resistance

  • @ref: 39754
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 39754
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
39754oxidase-
39754beta-galactosidase-3.2.1.23
39754gelatinase-
39754amylase+
39754DNase-
39754caseinase-3.4.21.50
39754catalase+1.11.1.6
39754tween esterase+
39754gamma-glutamyltransferase+2.3.2.2
39754lecithinase-
39754lipase-
39754protease-
39754urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39754--++-+-++--+---+----

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
39754MarseilleFranceFRAEurope
58855MarseilleFranceFRAEuropeHuman bronchial lavage,49-yr-old woman
39754MarseilleFranceFRAEuropeHuman, Broncial lavage1999

isolation source categories

Cat1Cat2Cat3
#Host#Human#Female
#Host Body-Site#Oral cavity and airways#Lung
#Infection#Medical environment#Medical practice

Safety information

risk assessment

  • @ref: 39754
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Mycobacterium barrassiae CCUG 50398
  • accession: GCA_025822765
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 319709

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno92.99no
flagellatedno98.455no
gram-positiveyes91.145no
anaerobicno99.265no
aerobicyes92.267yes
halophileno91.554no
spore-formingno87.774no
glucose-fermentno90.906no
thermophileno99.457no
glucose-utilyes85.289no

External links

@ref: 39754

culture collection no.: CIP 108545, CCUG 50398

literature

  • topic: Phylogeny
  • Pubmed-ID: 17021072
  • title: Mycobacterium barrassiae sp. nov., a Mycobacterium moriokaense group species associated with chronic pneumonia.
  • authors: Adekambi T, Raoult D, Drancourt M
  • journal: J Clin Microbiol
  • DOI: 10.1128/JCM.00724-06
  • year: 2006
  • mesh: Anti-Bacterial Agents/therapeutic use, Chronic Disease, Female, Humans, Middle Aged, Mycobacterium/*classification/genetics/*isolation & purification, Mycobacterium Infections/diagnosis/drug therapy/*microbiology, Phylogeny, Pneumonia, Bacterial/diagnosis/drug therapy/*microbiology
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39754Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108545Collection of Institut Pasteur (CIP 108545)
58855Curators of the CCUGhttps://www.ccug.se/strain?id=50398Culture Collection University of Gothenburg (CCUG) (CCUG 50398)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym