Strain identifier
BacDive ID: 138426
Type strain: 
Species: Helicobacter felis
Strain Designation: CS1
Strain history: CIP <- 1994, R.L. Ferrero, Inst. Pasteur, Paris, France <- A. Lee: strain CS1
NCBI tax ID(s): 936155 (strain), 214 (species)
version 9.3 (current version)
General
@ref: 39710
BacDive-ID: 138426
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Helicobacter felis CS1 is a mesophilic, Gram-negative bacterium of the family Helicobacteraceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 214 | species |
| 936155 | strain |
strain history
- @ref: 39710
- history: CIP <- 1994, R.L. Ferrero, Inst. Pasteur, Paris, France <- A. Lee: strain CS1
doi: 10.13145/bacdive138426.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Helicobacteraceae
- genus: Helicobacter
- species: Helicobacter felis
- full scientific name: Helicobacter felis Paster et al. 1991
@ref: 39710
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Helicobacteraceae
genus: Helicobacter
species: Helicobacter felis
strain designation: CS1
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | cell shape | motility |
|---|---|---|---|---|
| 125438 | negative | 97.477 | ||
| 39710 | negative | rod-shaped | yes |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 39710 | MEDIUM 45 - for Columbia agar with sheep blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml) | |
| 39710 | CIP Medium 45 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45 | |
| 39710 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 |
culture temp
- @ref: 39710
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: microaerophile
- confidence: 90.6
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 94.532 |
| 39710 | no |
Isolation, sampling and environmental information
isolation
| @ref | geographic location | country | origin.country | continent | sample type | isolation date |
|---|---|---|---|---|---|---|
| 39710 | Sydney | Australia | AUS | Australia and Oceania | ||
| 39710 | Sydney, New South Wales | Australia | AUS | Australia and Oceania | Animal, Cat, gastric mucosa | 1987 |
Safety information
risk assessment
- @ref: 39710
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 124043
- description: Helicobacter felis strain CS1 16S ribosomal RNA gene, complete sequence.
- accession: M57398
- length: 1474
- database: nuccore
- NCBI tax ID: 936155
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Helicobacter felis ATCC 49179 | GCA_000200595 | complete | ncbi | 936155 |
| 66792 | Helicobacter felis ATCC 49179 | 936155.3 | complete | patric | 936155 |
| 66792 | Helicobacter felis CS1, ATCC 49179 | 649633054 | complete | img | 936155 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.477 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 75.843 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 89.021 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 94.532 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 82.995 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 52.098 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 88.9 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 86.6 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 63.6 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | microaerophile | 90.6 |
External links
@ref: 39710
culture collection no.: CIP 104084, ATCC 49179, CCUG 28539, NCTC 12482, CIP 104382
straininfo link
- @ref: 95162
- straininfo: 42337
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 1704791 | Phylogeny of Helicobacter felis sp. nov., Helicobacter mustelae, and related bacteria. | Paster BJ, Lee A, Fox JG, Dewhirst FE, Tordoff LA, Fraser GJ, O'Rourke JL, Taylor NS, Ferrero R | Int J Syst Bacteriol | 10.1099/00207713-41-1-31 | 1991 | Animals, Base Sequence, Cats/microbiology, Dogs/microbiology, Gastric Mucosa/microbiology, Gram-Negative Anaerobic Bacteria/*classification/cytology/genetics/physiology, Molecular Sequence Data, *Phylogeny, RNA, Bacterial/*genetics, RNA, Ribosomal, 16S/*genetics, Terminology as Topic | Genetics |
| Genetics | 8112850 | Immunological and molecular characterization of Helicobacter felis urease. | Gootz TD, Perez-Perez GI, Clancy J, Martin BA, Tait-Kamradt A, Blaser MJ | Infect Immun | 10.1128/iai.62.3.793-798.1994 | 1994 | Base Sequence, Blotting, Southern, Helicobacter/*enzymology, Molecular Sequence Data, Molecular Weight, Urease/genetics/*immunology/metabolism | Enzymology |
| 10203471 | Serological discrimination of dogs infected with gastric Helicobacter spp. and uninfected dogs. | Strauss-Ayali D, Simpson KW, Schein AH, McDonough PL, Jacobson RH, Valentine BA, Peacock J | J Clin Microbiol | 10.1128/JCM.37.5.1280-1287.1999 | 1999 | Animals, Antigens, Bacterial/analysis, Dogs, Enzyme-Linked Immunosorbent Assay, Female, Gastritis/etiology, Helicobacter Infections/diagnosis/*immunology, Helicobacter pylori/*immunology, Immunoblotting, Immunoglobulin G/blood, Molecular Weight, Serologic Tests, Stomach/*microbiology | ||
| Metabolism | 10332832 | Helicobacter felis infection in dogs: effect on gastric structure and function. | Simpson KW, McDonough PL, Strauss-Ayali D, Chang YF, Harpending P, Valentine BA | Vet Pathol | 10.1354/vp.36-3-237 | 1999 | Animals, Biopsy/veterinary, Blotting, Southern/veterinary, DNA Primers/chemistry, DNA, Bacterial/chemistry, Dog Diseases/*microbiology/pathology/physiopathology, Dogs, Enzyme-Linked Immunosorbent Assay/veterinary, Female, Gastric Acid/metabolism, Gastrins/analysis/blood, Helicobacter/*pathogenicity, Helicobacter Infections/pathology/physiopathology/*veterinary, Immunohistochemistry, Male, Microscopy, Electron/veterinary, Polymerase Chain Reaction/veterinary, Radioimmunoassay/veterinary, Somatostatin/analysis, Specific Pathogen-Free Organisms, Stomach/*microbiology/pathology/physiopathology, Stomach Diseases/pathology/physiopathology/*veterinary, Urease/analysis | |
| Metabolism | 10639446 | Helicobacter felis infection is associated with lymphoid follicular hyperplasia and mild gastritis but normal gastric secretory function in cats. | Simpson KW, Strauss-Ayali D, Scanziani E, Straubinger RK, McDonough PL, Straubinger AF, Chang YF, Domeneghini C, Arebi N, Calam J | Infect Immun | 10.1128/IAI.68.2.779-790.2000 | 2000 | Animals, Antibodies, Bacterial/blood, Cats, Cytokines/biosynthesis, Gastric Mucosa/metabolism/*pathology, Gastrins/analysis, Gastritis/*etiology, Helicobacter Infections/*pathology, Hyperplasia, Immunohistochemistry, Lymphoid Tissue/*pathology, Male, Polymerase Chain Reaction, Somatostatin/analysis, Urease/metabolism | |
| Phylogeny | 15949811 | The inflammatory response in the mouse stomach to Helicobacter bizzozeronii, Helicobacter salomonis and two Helicobacter felis Strains. | De Bock M, Decostere A, Van den Bulck K, Baele M, Duchateau L, Haesebrouck F, Ducatelle R | J Comp Pathol | 10.1016/j.jcpa.2005.01.007 | 2005 | Animals, DNA, Bacterial/analysis, Disease Models, Animal, Gastritis/microbiology/*pathology, Helicobacter Infections/microbiology/*pathology, Helicobacter felis/classification/genetics/*pathogenicity, Male, Mice, Mice, Inbred Strains, Polymerase Chain Reaction, Species Specificity, Specific Pathogen-Free Organisms, Stomach/microbiology/*pathology, Virulence | Pathogenicity |
| Metabolism | 19457165 | Laboratory appraisal of optimal gaseous conditions for growth of zoonotic Helicobacter felis ATCC 49179. | Shiohara M, Kawakubo M, Matsumoto T, Kumagai T, Yamauchi K, Oana K, Ota H, Kawakami Y | Microbiol Immunol | 10.1111/j.1348-0421.2009.00117.x | 2009 | Animals, Carbon Dioxide/*metabolism, Gases/metabolism, Helicobacter Infections/*microbiology, Helicobacter felis/cytology/*growth & development/metabolism, Humans, Oxygen/*metabolism, Zoonoses/*microbiology | Pathogenicity |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 39710 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104084 | Collection of Institut Pasteur (CIP 104084) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 95162 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID42337.1 | |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | ||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |