Strain identifier
BacDive ID: 138358
Type strain:
Species: Rhodococcus erythropolis
Strain history: CIP <- 2000, L.K. Nakamura, NCAUR, Illinois, USA: strain NRRL B-16531 <- ATCC <- Ajinomoto Co, Inc. <- IAM
NCBI tax ID(s): 1833 (species)
General
@ref: 39542
BacDive-ID: 138358
keywords: 16S sequence, obligate aerobe, mesophilic, Gram-positive, rod-shaped
description: Rhodococcus erythropolis CIP 106505 is an obligate aerobe, mesophilic, Gram-positive prokaryote.
NCBI tax id
- NCBI tax id: 1833
- Matching level: species
strain history
@ref | history |
---|---|
67770 | IAM 1474 <-- H. Iizuka and K. Komagata P-9. |
39542 | CIP <- 2000, L.K. Nakamura, NCAUR, Illinois, USA: strain NRRL B-16531 <- ATCC <- Ajinomoto Co, Inc. <- IAM |
doi: 10.13145/bacdive138358.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- genus: Rhodococcus
- species: Rhodococcus erythropolis
- full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)
synonyms
@ref synonym 20215 Mycobacterium erythropolis 20215 Rhodococcus qingshengii 20215 Rhodococcus baikonurensis 20215 Rhodococcus jialingiae 20215 Rhodococcus enclensis 20215 Rhodococcus degradans
@ref: 39542
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus erythropolis
type strain: no
Morphology
cell morphology
- @ref: 39542
- gram stain: positive
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 39542
- hemolysis ability: 1
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
39542 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
39542 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
39542 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
39542 | positive | growth | 10-41 | |
39542 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 39542
- oxygen tolerance: obligate aerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
39542 | NaCl | positive | growth | 0-6 % |
39542 | NaCl | no | growth | 8 % |
39542 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
39542 | 16947 | citrate | - | carbon source |
39542 | 4853 | esculin | + | hydrolysis |
39542 | 606565 | hippurate | - | hydrolysis |
39542 | 17632 | nitrate | + | reduction |
39542 | 16301 | nitrite | - | reduction |
39542 | 17632 | nitrate | - | respiration |
metabolite production
- @ref: 39542
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
39542 | 15688 | acetoin | - | |
39542 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
39542 | oxidase | - | |
39542 | beta-galactosidase | + | 3.2.1.23 |
39542 | alcohol dehydrogenase | - | 1.1.1.1 |
39542 | gelatinase | - | |
39542 | amylase | - | |
39542 | DNase | - | |
39542 | caseinase | - | 3.4.21.50 |
39542 | catalase | + | 1.11.1.6 |
39542 | tween esterase | - | |
39542 | gamma-glutamyltransferase | - | 2.3.2.2 |
39542 | lecithinase | - | |
39542 | lipase | - | |
39542 | lysine decarboxylase | - | 4.1.1.18 |
39542 | ornithine decarboxylase | - | 4.1.1.17 |
39542 | protease | - | |
39542 | tryptophan deaminase | - | |
39542 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
39542 | - | + | + | + | + | + | + | + | - | - | + | + | - | + | - | + | + | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
39542 | + | + | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | + | - | - | - | - | + | + | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | - | - | - | - | - | + | + | + | + | + | + | - | - | - | - | - | - | - | + | + | - | + | - | - | + | + | + | - | - | + | + | - | + | - | + | + | + | + | + | + | - | - | + | + | - |
Isolation, sampling and environmental information
isolation
@ref | country | origin.country | continent | sample type |
---|---|---|---|---|
39542 | Japan | JPN | Asia | |
67770 | Japan | JPN | Asia | Soil in petroleum zone |
39542 | Japan | JPN | Asia | Environment, Soil, petroleum zone |
taxonmaps
- @ref: 69479
- File name: preview.99_1118.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_181;97_585;98_672;99_1118&stattab=map
- Last taxonomy: Nocardiaceae
- 16S sequence: AB429539
- Sequence Identity:
- Total samples: 28787
- soil counts: 7777
- aquatic counts: 6494
- animal counts: 11681
- plant counts: 2835
Safety information
risk assessment
- @ref: 39542
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 67770
- description: Rhodococcus erythropolis gene for 16S rRNA, partial sequence, strain: JCM 2893
- accession: AB429539
- length: 1440
- database: ena
- NCBI tax ID: 1833
GC content
- @ref: 67770
- GC-content: 60.9
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 39542
culture collection no.: CIP 106505, NRRL B-16531, ATCC 15960, JCM 2893, IAM 1474, CIP 104498
straininfo link
- @ref: 95112
- straininfo: 36597
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Metabolism | 18414802 | Identification of alkane hydroxylase genes in Rhodococcus sp. strain TMP2 that degrades a branched alkane. | Takei D, Washio K, Morikawa M | Biotechnol Lett | 10.1007/s10529-008-9710-9 | 2008 | Alkanes/*metabolism, Amino Acid Sequence, Cytochrome P-450 CYP4A/chemistry/*genetics, Gene Expression Regulation, Bacterial, *Genes, Bacterial, Microscopy, Electron, Scanning, Molecular Sequence Data, Phylogeny, RNA, Messenger/genetics/metabolism, Rhodococcus/cytology/*enzymology/*genetics/ultrastructure | Genetics |
Enzymology | 18610833 | [AlkB homologues in thermophilic bacteria of the genus Geobacillus]. | Turova TP, Nazina TN, Mikhailova EM, Rodionova TA, Ekimov AN, Mashukova AV, Poltaraus AB | Mol Biol (Mosk) | 2008 | Amino Acid Sequence/genetics, Bacillaceae/enzymology/*genetics/growth & development/isolation & purification, Bacterial Proteins/*genetics/metabolism, Biomass, Cytochrome P-450 CYP4A/*genetics/metabolism, Gene Transfer, Horizontal/*physiology, Genes, Bacterial/*physiology, *Phylogeny, Rhodococcus/enzymology/genetics, Sequence Analysis, Protein, Sequence Homology, Amino Acid | Phylogeny |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
39542 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106505 | Collection of Institut Pasteur (CIP 106505) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
95112 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID36597.1 |