Strain identifier

BacDive ID: 138358

Type strain: No

Species: Rhodococcus erythropolis

Strain history: CIP <- 2000, L.K. Nakamura, NCAUR, Illinois, USA: strain NRRL B-16531 <- ATCC <- Ajinomoto Co, Inc. <- IAM

NCBI tax ID(s): 1833 (species)

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General

@ref: 39542

BacDive-ID: 138358

keywords: 16S sequence, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Rhodococcus erythropolis CIP 106505 is an obligate aerobe, mesophilic, Gram-positive prokaryote.

NCBI tax id

  • NCBI tax id: 1833
  • Matching level: species

strain history

@refhistory
67770IAM 1474 <-- H. Iizuka and K. Komagata P-9.
39542CIP <- 2000, L.K. Nakamura, NCAUR, Illinois, USA: strain NRRL B-16531 <- ATCC <- Ajinomoto Co, Inc. <- IAM

doi: 10.13145/bacdive138358.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • genus: Rhodococcus
  • species: Rhodococcus erythropolis
  • full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Mycobacterium erythropolis
    20215Rhodococcus qingshengii
    20215Rhodococcus baikonurensis
    20215Rhodococcus jialingiae
    20215Rhodococcus enclensis
    20215Rhodococcus degradans

@ref: 39542

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus erythropolis

type strain: no

Morphology

cell morphology

  • @ref: 39542
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 39542
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39542MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
39542CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
39542positivegrowth30mesophilic
67770positivegrowth28mesophilic
39542positivegrowth10-41
39542nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 39542
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
39542NaClpositivegrowth0-6 %
39542NaClnogrowth8 %
39542NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3954216947citrate-carbon source
395424853esculin+hydrolysis
39542606565hippurate-hydrolysis
3954217632nitrate+reduction
3954216301nitrite-reduction
3954217632nitrate-respiration

metabolite production

  • @ref: 39542
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3954215688acetoin-
3954217234glucose-

enzymes

@refvalueactivityec
39542oxidase-
39542beta-galactosidase+3.2.1.23
39542alcohol dehydrogenase-1.1.1.1
39542gelatinase-
39542amylase-
39542DNase-
39542caseinase-3.4.21.50
39542catalase+1.11.1.6
39542tween esterase-
39542gamma-glutamyltransferase-2.3.2.2
39542lecithinase-
39542lipase-
39542lysine decarboxylase-4.1.1.18
39542ornithine decarboxylase-4.1.1.17
39542protease-
39542tryptophan deaminase-
39542urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39542-+++++++--++-+-++---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
39542++-+---+-----------+------+----+++--+------------+---+-----++++++-------++-+--+++--++-+-++++++--++-

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
39542JapanJPNAsia
67770JapanJPNAsiaSoil in petroleum zone
39542JapanJPNAsiaEnvironment, Soil, petroleum zone

taxonmaps

  • @ref: 69479
  • File name: preview.99_1118.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_181;97_585;98_672;99_1118&stattab=map
  • Last taxonomy: Nocardiaceae
  • 16S sequence: AB429539
  • Sequence Identity:
  • Total samples: 28787
  • soil counts: 7777
  • aquatic counts: 6494
  • animal counts: 11681
  • plant counts: 2835

Safety information

risk assessment

  • @ref: 39542
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Rhodococcus erythropolis gene for 16S rRNA, partial sequence, strain: JCM 2893
  • accession: AB429539
  • length: 1440
  • database: ena
  • NCBI tax ID: 1833

GC content

  • @ref: 67770
  • GC-content: 60.9
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 39542

culture collection no.: CIP 106505, NRRL B-16531, ATCC 15960, JCM 2893, IAM 1474, CIP 104498

straininfo link

  • @ref: 95112
  • straininfo: 36597

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism18414802Identification of alkane hydroxylase genes in Rhodococcus sp. strain TMP2 that degrades a branched alkane.Takei D, Washio K, Morikawa MBiotechnol Lett10.1007/s10529-008-9710-92008Alkanes/*metabolism, Amino Acid Sequence, Cytochrome P-450 CYP4A/chemistry/*genetics, Gene Expression Regulation, Bacterial, *Genes, Bacterial, Microscopy, Electron, Scanning, Molecular Sequence Data, Phylogeny, RNA, Messenger/genetics/metabolism, Rhodococcus/cytology/*enzymology/*genetics/ultrastructureGenetics
Enzymology18610833[AlkB homologues in thermophilic bacteria of the genus Geobacillus].Turova TP, Nazina TN, Mikhailova EM, Rodionova TA, Ekimov AN, Mashukova AV, Poltaraus ABMol Biol (Mosk)2008Amino Acid Sequence/genetics, Bacillaceae/enzymology/*genetics/growth & development/isolation & purification, Bacterial Proteins/*genetics/metabolism, Biomass, Cytochrome P-450 CYP4A/*genetics/metabolism, Gene Transfer, Horizontal/*physiology, Genes, Bacterial/*physiology, *Phylogeny, Rhodococcus/enzymology/genetics, Sequence Analysis, Protein, Sequence Homology, Amino AcidPhylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39542Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106505Collection of Institut Pasteur (CIP 106505)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
95112Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID36597.1