Strain identifier
BacDive ID: 138332
Type strain:
Species: Alterococcus agarolyticus
Strain Designation: ADT3
Strain history: CIP <- 1999, W.Y. Shieh, Inst. Oceanog., Taipei, Taiwan: strain ADT3
NCBI tax ID(s): 78554 (species)
version 8.1 (current version)
General
@ref: 39475
BacDive-ID: 138332
keywords: Bacteria, thermophilic, Gram-negative, motile, rod-shaped
description: Alterococcus agarolyticus ADT3 is a thermophilic, Gram-negative, motile bacterium of the family Opitutaceae.
NCBI tax id
- NCBI tax id: 78554
- Matching level: species
strain history
@ref | history |
---|---|
39475 | 1999, W.Y. Shieh, Inst. Oceanog., Taipei, Taiwan: strain ADT3 |
39475 | CIP <- 1999, W.Y. Shieh, Inst. Oceanog., Taipei, Taiwan: strain ADT3 |
doi: 10.13145/bacdive138332.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/verrucomicrobiota
- domain: Bacteria
- phylum: Verrucomicrobiota
- class: Opitutia
- order: Opitutales
- family: Opitutaceae
- genus: Alterococcus
- species: Alterococcus agarolyticus
- full scientific name: Alterococcus agarolyticus Shieh and Jean 1999
@ref: 39475
domain: Bacteria
phylum: Verrucomicrobia
class: Opitutae
order: Opitutales
family: Opitutaceae
genus: Alterococcus
species: Alterococcus agarolyticus
strain designation: ADT3
type strain: yes
Morphology
cell morphology
- @ref: 39475
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
39475 | MEDIUM 327 - for Alterococcus | yes | Distilled water make up to (1000.000 ml);Sodium chloride (20.000 g);Magnesium sulphate heptahydrate (0.500 g);Calcium chloride dihydrate (0.010 g);Agar (15.000 g);Yeast extract (2.000 g);Peptone (4.000 g);MOPSO(3-[N-Mopholino]-2-hydroxypropanesulfonic aci | |
39475 | CIP Medium 327 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=327 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
39475 | positive | growth | 45 | thermophilic |
39475 | positive | growth | 41-45 | thermophilic |
39475 | no | growth | 5 | psychrophilic |
39475 | no | growth | 10 | psychrophilic |
39475 | no | growth | 30 | mesophilic |
39475 | no | growth | 37 | mesophilic |
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
39475 | 16947 | citrate | - | carbon source |
39475 | 4853 | esculin | - | hydrolysis |
39475 | 17632 | nitrate | - | reduction |
39475 | 16301 | nitrite | - | reduction |
39475 | 15792 | malonate | - | assimilation |
metabolite production
- @ref: 39475
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
39475 | 15688 | acetoin | - | |
39475 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
39475 | oxidase | + | |
39475 | beta-galactosidase | - | 3.2.1.23 |
39475 | alcohol dehydrogenase | - | 1.1.1.1 |
39475 | gelatinase | - | |
39475 | catalase | + | 1.11.1.6 |
39475 | lysine decarboxylase | - | 4.1.1.18 |
39475 | ornithine decarboxylase | - | 4.1.1.17 |
39475 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
39475 | tryptophan deaminase | - | |
39475 | urease | - | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
@ref | geographic location | country | origin.country | continent | sample type | isolation date |
---|---|---|---|---|---|---|
39475 | Lutao | Taiwan | TWN | Asia | ||
39475 | Lutao | Taiwan | TWN | Asia | Environment, Coastal hot spring water | 1996 |
Safety information
risk assessment
- @ref: 39475
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
External links
@ref: 39475
culture collection no.: CIP 106113, CCRC 19135
straininfo link
- @ref: 95088
- straininfo: 67256
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
39475 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106113 | Collection of Institut Pasteur (CIP 106113) | |
95088 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID67256.1 |