Strain identifier

BacDive ID: 138259

Type strain: No

Species: Bacteroides fragilis

Strain history: CIP <- 1999, J.P. Carlier, Inst. Pasteur, Paris, France <- ATCC <- L.L. Myers

NCBI tax ID(s): 817 (species)

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General

@ref: 39381

BacDive-ID: 138259

keywords: Bacteria, mesophilic, Gram-negative, rod-shaped

description: Bacteroides fragilis CIP 105892 is a mesophilic, Gram-negative, rod-shaped bacterium of the family Bacteroidaceae.

NCBI tax id

  • NCBI tax id: 817
  • Matching level: species

strain history

  • @ref: 39381
  • history: CIP <- 1999, J.P. Carlier, Inst. Pasteur, Paris, France <- ATCC <- L.L. Myers

doi: 10.13145/bacdive138259.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Bacteroidaceae
  • genus: Bacteroides
  • species: Bacteroides fragilis
  • full scientific name: Bacteroides fragilis (Veillon and Zuber 1898) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus fragilis

@ref: 39381

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Bacteroidaceae

genus: Bacteroides

species: Bacteroides fragilis

type strain: no

Morphology

cell morphology

  • @ref: 39381
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 39381

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39381MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
39381CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20
39381CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

  • @ref: 39381
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3938115824D-fructose+degradation
3938117634D-glucose+degradation
3938165327D-xylose+degradation
3938117057cellobiose-degradation
3938117716lactose+degradation
3938117306maltose+degradation
3938117814salicin-degradation
3938117992sucrose+degradation
393814853esculin+hydrolysis
3938117632nitrate-reduction
3938116301nitrite-reduction
3938117632nitrate+respiration

metabolite production

  • @ref: 39381
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
39381oxidase-
39381beta-galactosidase+3.2.1.23
39381gelatinase-
39381amylase-
39381caseinase-3.4.21.50
39381catalase+1.11.1.6
39381tween esterase-
39381lecithinase-
39381lipase-
39381protease-
39381urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase+3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39381-+++------++++++-+-+

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
39381MontanaUSAUSANorth America
39381MontanaUnited States of AmericaUSANorth AmericaHuman, Infant, diarrhea

Safety information

risk assessment

  • @ref: 39381
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 39381

culture collection no.: CIP 105892, ATCC 43859

straininfo link

  • @ref: 95016
  • straininfo: 42087

literature

  • Pubmed-ID: 27703449
  • title: Exploratory Investigation of Bacteroides fragilis Transcriptional Response during In vitro Exposure to Subinhibitory Concentration of Metronidazole.
  • authors: de Freitas MC, Resende JA, Ferreira-Machado AB, Saji GD, de Vasconcelos AT, da Silva VL, Nicolas MF, Diniz CG
  • journal: Front Microbiol
  • DOI: 10.3389/fmicb.2016.01465
  • year: 2016

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39381Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105892Collection of Institut Pasteur (CIP 105892)
68382Automatically annotated from API zym
95016Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID42087.1