Strain identifier

BacDive ID: 138248

Type strain: Yes

Species: Novispirillum itersonii

Strain Designation: Giesberger

Strain history: CIP <- 1998, ATCC <- M.A. Williams: strain Giesberger

NCBI tax ID(s): 189 (species)

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General

@ref: 39368

BacDive-ID: 138248

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, motile

description: Novispirillum itersonii Giesberger is an obligate aerobe, mesophilic, motile bacterium that was isolated from Freshwater.

NCBI tax id

  • NCBI tax id: 189
  • Matching level: species

strain history

@refhistory
67770IAM 14720 <-- IFO 15648 <-- ATCC 12639 <-- M. A. Williams strain Giesberger ("Spirillum itersonii").
39368CIP <- 1998, ATCC <- M.A. Williams: strain Giesberger

doi: 10.13145/bacdive138248.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Rhodospirillaceae
  • genus: Novispirillum
  • species: Novispirillum itersonii
  • full scientific name: Novispirillum itersonii (Giesberger 1936) Yoon et al. 2007

  • synonyms

    @refsynonym
    20215Levispirillum itersonii
    20215Spirillum itersonii
    20215Aquaspirillum itersonii

@ref: 39368

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Rhodospirillaceae

genus: Novispirillum

species: Novispirillum itersonii

strain designation: Giesberger

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes95.13
6948099.994negative
39368yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39368MEDIUM 14 - Williams and Rittenberg medium for Aquaspirillum genusyesDistilled water make up to (1000.000 ml);Agar (13.000 g);Yeast extract (3.000 g);Peptone (5.000 g);Beef extract (3.000 g)
39368CIP Medium 14yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=14

culture temp

@refgrowthtypetemperaturerange
39368positivegrowth30mesophilic
67770positivegrowth30mesophilic
39368positivegrowth15-37
39368nogrowth5psychrophilic
39368nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 39368
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no97
69480no99.979

halophily

@refsaltgrowthtested relationconcentration
39368NaClpositivegrowth0 %
39368NaClnogrowth2 %
39368NaClnogrowth4 %
39368NaClnogrowth6 %
39368NaClnogrowth8 %
39368NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
393684853esculin+hydrolysis
3936817234glucose-fermentation
3936817716lactose-fermentation
3936817632nitrate+reduction
3936816301nitrite+reduction
39368132112sodium thiosulfate-builds gas from
3936817234glucose-degradation
3936817632nitrate-respiration

antibiotic resistance

  • @ref: 39368
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 39368
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3936815688acetoin-
3936817234glucose-

enzymes

@refvalueactivityec
39368oxidase-
39368beta-galactosidase-3.2.1.23
39368alcohol dehydrogenase-1.1.1.1
39368gelatinase-
39368catalase+1.11.1.6
39368gamma-glutamyltransferase+2.3.2.2
39368lysine decarboxylase-4.1.1.18
39368ornithine decarboxylase-4.1.1.17
39368phenylalanine ammonia-lyase+4.3.1.24
39368tryptophan deaminase-
39368urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39368-+++-+----++--------

Isolation, sampling and environmental information

isolation

@refsample type
67770Freshwater
39368Environment, Pond water

taxonmaps

  • @ref: 69479
  • File name: preview.99_41551.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_292;96_19274;97_23917;98_30236;99_41551&stattab=map
  • Last taxonomy: Novispirillum itersonii subclade
  • 16S sequence: EF612765
  • Sequence Identity:
  • Total samples: 2678
  • soil counts: 172
  • aquatic counts: 1741
  • animal counts: 678
  • plant counts: 87

Safety information

risk assessment

  • @ref: 39368
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Aquaspirillum itersonii subsp. itersonii strain LMG 4337 16S ribosomal RNA gene, partial sequence
  • accession: EF612765
  • length: 1442
  • database: ena
  • NCBI tax ID: 180199

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Novispirillum itersonii subsp. itersonii ATCC 126391279038.3wgspatric1279038
66792Novispirillum itersonii itersonii ATCC 126392519899638draftimg1279038
67770Novispirillum itersonii subsp. itersonii ATCC 12639GCA_000381985scaffoldncbi1279038

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno97no
motileyes96.715no
gram-positiveno98.868no
anaerobicno96.182no
aerobicyes79.557no
halophileno89.877no
spore-formingno94.333no
thermophileno98.77yes
glucose-utilyes79.182no
flagellatedyes89.799no
glucose-fermentno87.08no

External links

@ref: 39368

culture collection no.: CIP 105798, ATCC 12639, NCIMB 9070, NRRL B-2053, JCM 21278, CCUG 13727, IAM 14720, IAM 15031, IFO 15648, JCM 21494, LMG 4337, NBRC 15648

straininfo link

  • @ref: 95009
  • straininfo: 898

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism4808897Transport and catabolism of D-fructose by Spirillum itersomii.Hylemon PB, Krieg NR, Phibbs PV JrJ Bacteriol10.1128/jb.117.1.144-150.19741974Alcohol Oxidoreductases/metabolism, Aldehyde-Lyases/metabolism, Carbon Radioisotopes, Cell-Free System, Chloromercuribenzoates/pharmacology, Culture Media, Cyanides/pharmacology, Enzyme Induction, Fructose/*metabolism, Fructose-Bisphosphate Aldolase/metabolism, Glucokinase/metabolism, Glucose/metabolism, Glucose-6-Phosphate Isomerase/metabolism, Glucosephosphate Dehydrogenase/metabolism, Hydro-Lyases/metabolism, Lithium/pharmacology, Nitrates/pharmacology, Phosphogluconate Dehydrogenase/metabolism, Sodium/pharmacology, Spectrophotometry, Spirillum/enzymology/growth & development/*metabolism, Stereoisomerism, Succinates/metabolismEnzymology
Phylogeny18048733Reclassification of Aquaspirillum itersonii and Aquaspirillum peregrinum as Novispirillum itersonii gen. nov., comb. nov. and Insolitispirillum peregrinum gen. nov., comb. nov.Yoon JH, Kang SJ, Park S, Lee SY, Oh TKInt J Syst Evol Microbiol10.1099/ijs.0.65340-02007Bacterial Typing Techniques, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Neisseriaceae/chemistry/*classification/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Ubiquinone/analysisGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39368Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105798Collection of Institut Pasteur (CIP 105798)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
95009Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID898.1