Strain identifier
BacDive ID: 13821
Type strain: 
Species: Rhodobacter veldkampii
Strain Designation: 51, BN 714
Culture col. no.: DSM 11550, ATCC 35703, CIP 103912, IFO 16458, NBRC 16458
General
@ref: 4412
BacDive-ID: 13821
DSM-Number: 11550
keywords: anaerobe, Bacteria, 16S sequence, genome sequence, mesophilic
description: Rhodobacter veldkampii 51 is an anaerobe, mesophilic bacterium that was isolated from freshwater pond.
strain history: <- ATCC <- J. F. Imhoff; 51 <- T. A. Hansen; CIP 103912
doi: 10.13145/bacdive13821.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Rhodobacteraceae
- genus: Rhodobacter
- species: Rhodobacter veldkampii
- full scientific name: Rhodobacter veldkampii Hansen and Imhoff 1985
synonyms
@ref synonym 20215 Bieblia veldkampii 20215 Phaeovulum veldkampii
@ref: 4412
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Rhodobacter
species: Rhodobacter veldkampii
full scientific name: Rhodobacter veldkampii Hansen and Imhoff 1985
strain designation: 51, BN 714
type strain: yes
Culture and growth conditions
culture medium
- @ref: 4412
- name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27), anaerobic in light
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium27.pdf
culture temp
- @ref: 4412
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4412
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4412
- sample type: freshwater pond
- country: Netherlands
- origin.country: NLD
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Aquatic | #Pond (small) |
Safety information
risk assessment
- @ref: 4412
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Rhodobacter veldkampii 16S rRNA | D13477 | 1351 | ena | 1185920 |
| 20218 | Rhodobacter veldkampii gene for 16S rRNA | D16421 | 1389 | ena | 1185920 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhodobacter veldkampii DSM 11550 | GCA_004363195 | scaffold | ncbi | 1185920 |
| 66792 | Rhodobacter veldkampii DSM 11550 | GCA_003034995 | contig | ncbi | 1185920 |
| 66792 | Rhodobacter veldkampii DSM 11550 | 1185920.6 | wgs | patric | 1185920 |
| 66792 | Rhodobacter veldkampii DSM 11550 | 1185920.4 | wgs | patric | 1185920 |
| 66792 | Rhodobacter veldkampii DSM 11550 | 2795385478 | permanent | img | 1185920 |
External links
@ref: 4412
culture collection no.: DSM 11550, ATCC 35703, CIP 103912, IFO 16458, NBRC 16458
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/162730 |
| 20218 | http://www.straininfo.net/strains/111091 |
| 20218 | http://www.straininfo.net/strains/111092 |
| 20218 | http://www.straininfo.net/strains/162731 |
| 20218 | http://www.straininfo.net/strains/534211 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4412 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11550) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11550 | |||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |