Strain identifier

BacDive ID: 13821

Type strain: Yes

Species: Rhodobacter veldkampii

Strain Designation: 51, BN 714

Culture col. no.: DSM 11550, ATCC 35703, CIP 103912, IFO 16458, NBRC 16458

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 4412

BacDive-ID: 13821

DSM-Number: 11550

keywords: anaerobe, Bacteria, 16S sequence, genome sequence, mesophilic

description: Rhodobacter veldkampii 51 is an anaerobe, mesophilic bacterium that was isolated from freshwater pond.

strain history: <- ATCC <- J. F. Imhoff; 51 <- T. A. Hansen; CIP 103912

doi: 10.13145/bacdive13821.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Rhodobacteraceae
  • genus: Rhodobacter
  • species: Rhodobacter veldkampii
  • full scientific name: Rhodobacter veldkampii Hansen and Imhoff 1985
  • synonyms

    @refsynonym
    20215Bieblia veldkampii
    20215Phaeovulum veldkampii

@ref: 4412

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Rhodobacter

species: Rhodobacter veldkampii

full scientific name: Rhodobacter veldkampii Hansen and Imhoff 1985

strain designation: 51, BN 714

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 4412
  • name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27), anaerobic in light
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium27.pdf

culture temp

  • @ref: 4412
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 4412
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 4412
  • sample type: freshwater pond
  • country: Netherlands
  • origin.country: NLD
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#Pond (small)

Safety information

risk assessment

  • @ref: 4412
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Rhodobacter veldkampii 16S rRNAD134771351ena1185920
20218Rhodobacter veldkampii gene for 16S rRNAD164211389ena1185920

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Rhodobacter veldkampii DSM 11550GCA_004363195scaffoldncbi1185920
66792Rhodobacter veldkampii DSM 11550GCA_003034995contigncbi1185920
66792Rhodobacter veldkampii DSM 115501185920.6wgspatric1185920
66792Rhodobacter veldkampii DSM 115501185920.4wgspatric1185920
66792Rhodobacter veldkampii DSM 115502795385478permanentimg1185920

External links

@ref: 4412

culture collection no.: DSM 11550, ATCC 35703, CIP 103912, IFO 16458, NBRC 16458

straininfo link

@refpassport
20218http://www.straininfo.net/strains/162730
20218http://www.straininfo.net/strains/111091
20218http://www.straininfo.net/strains/111092
20218http://www.straininfo.net/strains/162731
20218http://www.straininfo.net/strains/534211

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4412Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11550)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11550
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)