Strain identifier

BacDive ID: 138206

Type strain: No

Species: Helicobacter cinaedi

Strain Designation: 86-8853

Strain history: CIP <- 1997, CCUG <- 1986, H. Lior, LCDC, Ottawa, Ontario, Canada: strain 86-8853

NCBI tax ID(s): 213 (species)

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General

@ref: 39279

BacDive-ID: 138206

keywords: genome sequence, Bacteria, mesophilic, motile

description: Helicobacter cinaedi 86-8853 is a mesophilic, motile bacterium of the family Helicobacteraceae.

NCBI tax id

  • NCBI tax id: 213
  • Matching level: species

strain history

  • @ref: 39279
  • history: CIP <- 1997, CCUG <- 1986, H. Lior, LCDC, Ottawa, Ontario, Canada: strain 86-8853

doi: 10.13145/bacdive138206.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Helicobacteraceae
  • genus: Helicobacter
  • species: Helicobacter cinaedi
  • full scientific name: Helicobacter cinaedi (Totten et al. 1988) Vandamme et al. 1991

  • synonyms

    • @ref: 20215
    • synonym: Campylobacter cinaedi

@ref: 39279

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Helicobacteraceae

genus: Helicobacter

species: Helicobacter cinaedi

strain designation: 86-8853

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes94.453
6948099.995negative
39279yesnegativerod-shaped

colony morphology

  • @ref: 39279

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39279MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
39279Brucella brothyes
39279CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
39279positivegrowth37mesophilic
39279positivegrowth30-37mesophilic
39279nogrowth5psychrophilic
39279nogrowth10psychrophilic
39279nogrowth25mesophilic
39279nogrowth41thermophilic
39279nogrowth45thermophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.997

halophily

  • @ref: 39279
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
39279606565hippurate-hydrolysis
3927917632nitrate+reduction
3927916301nitrite-reduction
6837316199urea-hydrolysis
6837317632nitrate-reduction
68373606565hippurate-hydrolysis
6837378019triphenyltetrazolium chloride-reduction
6837317634D-glucose-assimilation
6837330031succinate-assimilation
6837330089acetate+assimilation
6837317272propionate-assimilation
6837325115malate+assimilation
6837316947citrate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg

metabolite production

@refChebi-IDmetaboliteproduction
6837316136hydrogen sulfideno
3927935581indoleno

enzymes

@refvalueactivityec
68373catalase+1.11.1.6
68373alkaline phosphatase-3.1.3.1
68373L-aspartate arylamidase-3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase-2.3.2.2
68373esterase-
68373urease-3.5.1.5
39279oxidase+
39279gelatinase-
39279DNase-
39279catalase+1.11.1.6
39279gamma-glutamyltransferase-2.3.2.2
39279urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    47010C12:06.212
    47010C13:00.313
    47010C14:02814
    47010C15:00.615
    47010C16:033.216
    47010C17:00.117
    47010C18:00.318
    47010C12:0 3OH3.713.455
    47010C13:0 ISO 2OH0.313.814
    47010C14:0 ISO0.213.618
    47010C16:0 3OH417.52
    47010C16:1 ω7c0.515.819
    47010C17:1 ω6c0.116.862
    47010C18:1 ω7c /12t/9t20.217.824
    47010C18:2 ω6,9c/C18:0 ANTE0.717.724
    47010Unidentified0.213.739
    47010Unidentified0.214.738
    47010unknown 12.486112.486
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39279--++------++---+----

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
47010---------------+-+--+

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typesampling dateisolation date
39279OttawaCanadaCANNorth America
47010OttawaCanadaCANNorth AmericaHuman blood,24-yr-old f,hip suppurative arthritis1986
39279OttawaCanadaCANNorth AmericaHuman, Blood1986

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Blood
#Host Body-Site#Other#Bone
#Host#Human#Female
#Infection#Inflammation

Safety information

risk assessment

  • @ref: 39279
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Helicobacter cinaedi CCUG19503GCA_003216315contigncbi213
66792Helicobacter cinaedi strain CCUG19503213.46wgspatric213

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno89no
motileyes93.104no
gram-positiveno99.186no
anaerobicno58.624no
aerobicno97.471no
halophileno88.86no
spore-formingno95.044no
glucose-utilno89.687yes
flagellatedyes55.741no
thermophileno58.027yes
glucose-fermentno88.904no

External links

@ref: 39279

culture collection no.: CIP 105370, CCUG 19503, LMG 8778, LMG 9357

straininfo link

  • @ref: 94979
  • straininfo: 2999

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39279Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105370Collection of Institut Pasteur (CIP 105370)
47010Curators of the CCUGhttps://www.ccug.se/strain?id=19503Culture Collection University of Gothenburg (CCUG) (CCUG 19503)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68373Automatically annotated from API CAM
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
94979Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID2999.1