Strain identifier
BacDive ID: 138128
Type strain:
Species: Clostridioides difficile
Strain Designation: 545
Strain history: CIP <- 1996, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 10133, Clostridium difficile C <- M. Delmée, Leuven, Belgium: strain 545
NCBI tax ID(s): 1496 (species)
General
@ref: 39141
BacDive-ID: 138128
keywords: Bacteria, anaerobe, mesophilic
description: Clostridioides difficile 545 is an anaerobe, mesophilic bacterium of the family Peptostreptococcaceae.
NCBI tax id
- NCBI tax id: 1496
- Matching level: species
strain history
- @ref: 39141
- history: CIP <- 1996, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 10133, Clostridium difficile C <- M. Delmée, Leuven, Belgium: strain 545
doi: 10.13145/bacdive138128.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptostreptococcaceae
- genus: Clostridioides
- species: Clostridioides difficile
- full scientific name: Clostridioides difficile (Hall and O'Toole 1935) Lawson et al. 2016
synonyms
@ref synonym 20215 Bacillus difficilis 20215 Peptoclostridium difficile 20215 Clostridium difficile
@ref: 39141
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Peptostreptococcaceae
genus: Clostridioides
species: Clostridioides difficile
strain designation: 545
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
39141 | MEDIUM 20 - for Anaerobic bacteria | yes | Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml) | |
39141 | CIP Medium 20 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
39141 | positive | growth | 37 | mesophilic |
53852 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 53852
- oxygen tolerance: anaerobe
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 53852 C10:0 1.5 10 53852 C12:0 4.1 12 53852 C14:0 3.1 14 53852 C16:0 15.4 16 53852 C18:0 7.6 18 53852 C12:0 ISO 1.3 11.608 53852 C13:0 ISO 2OH 1.1 13.814 53852 C16:0 aldehyde 5 14.949 53852 C16:0 iso 2.2 15.626 53852 C16:1 ω7c 8.8 15.819 53852 C16:1 ω9c 6 15.774 53852 C17:0 CYCLO 3.3 16.888 53852 C17:1 ISO I/C16:0 DMA 17 16.481 53852 C18:1 ISO H 1.7 17.46 53852 C18:1 ω7c /12t/9t 2.4 17.824 53852 C18:1 ω9c 5.4 17.769 53852 C18:2 ω6,9c/C18:0 ANTE 2 17.724 53852 C19:0 CYCLO ω9c 3.7 18.87 53852 C19:1 ISO I 5.4 18.473 53852 Unidentified 1.5 16.108 53852 unknown 9.730 1.8 9.73 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
@ref | country | origin.country | continent | sample type |
---|---|---|---|---|
39141 | Belgium | BEL | Europe | |
39141 | Belgium | BEL | Europe | Human, Feces |
Safety information
risk assessment
- @ref: 39141
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
External links
@ref: 39141
culture collection no.: CIP 104904, ATCC 43596, CCUG 37766
straininfo link
- @ref: 94918
- straininfo: 41930
literature
- Pubmed-ID: 35500838
- title: Activity of omadacycline in vitro against Clostridioides difficile and preliminary efficacy assessment in a hamster model of C. difficile-associated diarrhea.
- authors: Leahy RG, Serio AW, Wright K, Traczewski MM, Tanaka SK
- journal: J Glob Antimicrob Resist
- DOI: 10.1016/j.jgar.2022.04.019
- year: 2022
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
39141 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104904 | Collection of Institut Pasteur (CIP 104904) | |
53852 | Curators of the CCUG | https://www.ccug.se/strain?id=37766 | Culture Collection University of Gothenburg (CCUG) (CCUG 37766) | |
94918 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID41930.1 |