Strain identifier

BacDive ID: 138110

Type strain: No

Species: Gordonia terrae

Strain Designation: W 5381

Strain history: CIP <- 1996, D. Raoult, Medicine Fac., Marseille, France: strain W 5381

NCBI tax ID(s): 2055 (species)

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General

@ref: 39118

BacDive-ID: 138110

keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Gordonia terrae W 5381 is an obligate aerobe, mesophilic, Gram-positive bacterium of the family Gordoniaceae.

NCBI tax id

  • NCBI tax id: 2055
  • Matching level: species

strain history

@refhistory
391181996, D. Raoult, Fac. Med., Marseille, France: strain W 5381
39118CIP <- 1996, D. Raoult, Medicine Fac., Marseille, France: strain W 5381

doi: 10.13145/bacdive138110.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Gordoniaceae
  • genus: Gordonia
  • species: Gordonia terrae
  • full scientific name: Gordonia terrae corrig. (Tsukamura 1971) Stackebrandt et al. 1989

  • synonyms

    @refsynonym
    20215Gordona terrae
    20215Rhodococcus terrae

@ref: 39118

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Gordoniaceae

genus: Gordonia

species: Gordonia terrae

strain designation: W 5381

type strain: no

Morphology

cell morphology

  • @ref: 39118
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 39118

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39118MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
39118CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
39118positivegrowth30mesophilic
39118positivegrowth10-41
39118nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 39118
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
39118NaClpositivegrowth8 %
39118NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
39118citrate-carbon source16947
39118esculin+hydrolysis4853
39118hippurate+hydrolysis606565
39118nitrate-reduction17632
39118nitrite-reduction16301
39118nitrate-respiration17632

antibiotic resistance

  • @ref: 39118
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 39118
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3911815688acetoin-
3911817234glucose-

enzymes

@refvalueactivityec
39118oxidase-
39118beta-galactosidase-3.2.1.23
39118alcohol dehydrogenase-1.1.1.1
39118gelatinase-
39118amylase-
39118DNase-
39118caseinase-3.4.21.50
39118catalase+1.11.1.6
39118tween esterase-
39118gamma-glutamyltransferase-2.3.2.2
39118lecithinase-
39118lipase-
39118lysine decarboxylase-4.1.1.18
39118ornithine decarboxylase-4.1.1.17
39118phenylalanine ammonia-lyase-4.3.1.24
39118protease-
39118tryptophan deaminase-
39118urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39118-+++++-+--++---++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
39118----------+/-+/---+/----------+/------+/-+/--------+/----------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
39118++-+--------------+----+-------------------------+---+----------+--+------------+---------------+--

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
39118MarseilleFranceFRAEurope
39118MarseilleFranceFRAEuropeHuman, Spinal fluid1992

Safety information

risk assessment

  • @ref: 39118
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 39118

culture collection no.: CIP 104939

straininfo link

  • @ref: 94902
  • straininfo: 68642

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39118Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104939Collection of Institut Pasteur (CIP 104939)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
94902Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID68642.1