Strain identifier

BacDive ID: 138108

Type strain: No

Species: Nocardia otitidiscaviarum

Strain history: CIP <- 1996, JCM <- IFM <- H. Hachisuka

NCBI tax ID(s): 1823 (species)

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General

@ref: 39116

BacDive-ID: 138108

keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Nocardia otitidiscaviarum CIP 104836 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from Cutaneous nocardiosis of a male.

NCBI tax id

  • NCBI tax id: 1823
  • Matching level: species

strain history

@refhistory
67770IFM 0273 <-- H. Hachisuka.
39116CIP <- 1996, JCM <- IFM <- H. Hachisuka

doi: 10.13145/bacdive138108.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Nocardia
  • species: Nocardia otitidiscaviarum
  • full scientific name: Nocardia otitidiscaviarum corrig. Snijders 1924 (Approved Lists 1980)

@ref: 39116

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Nocardia

species: Nocardia otitidiscaviarum

type strain: no

Morphology

cell morphology

  • @ref: 39116
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 39116

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39116MEDIUM 115 - for Nocardia otitidiscaviarum and Nocardia diaphanozonariayesDistilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (10.000g);Yeast extract (2.000 g);Di Potassium monohydrogenophosphate (0.500 g);L-Asparagine (1.000 g)
39116CIP Medium 115yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=115

culture temp

@refgrowthtypetemperaturerange
39116positivegrowth30mesophilic
67770positivegrowth37mesophilic
39116positivegrowth25-37mesophilic
39116nogrowth10psychrophilic
39116nogrowth41thermophilic
39116nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 39116
  • oxygen tolerance: obligate aerobe

compound production

  • @ref: 67770
  • compound: Toxic substance HS-6

halophily

@refsaltgrowthtested relationconcentration
39116NaClpositivegrowth0-2 %
39116NaClnogrowth4 %
39116NaClnogrowth6 %
39116NaClnogrowth8 %
39116NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: MK-8(H4)

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-fructose-builds acid from15824
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
39116citrate-carbon source16947
39116esculin+hydrolysis4853
39116hippurate+hydrolysis606565
39116nitrate+reduction17632
39116nitrite-reduction16301
39116nitrate-respiration17632

antibiotic resistance

  • @ref: 39116
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 39116
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3911615688acetoin-
3911617234glucose-

enzymes

@refvalueactivityec
39116oxidase-
39116beta-galactosidase+3.2.1.23
39116gelatinase+/-
39116amylase-
39116DNase-
39116caseinase-3.4.21.50
39116catalase+1.11.1.6
39116tween esterase-
39116gamma-glutamyltransferase-2.3.2.2
39116lecithinase-
39116lipase-
39116lysine decarboxylase-4.1.1.18
39116ornithine decarboxylase-4.1.1.17
39116phenylalanine ammonia-lyase-4.3.1.24
39116tryptophan deaminase-
39116urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39116-+++-+-+--++----+---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
39116----------+/--+/-------+/---++++-------------+/---------+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
39116++++---------------+----+------++--------------+-++--+----+++-+---------+-----+++-----+-+++++++-+--

Isolation, sampling and environmental information

isolation

@refsample type
67770Cutaneous nocardiosis of a male
39116Human, Cutaneous nocardiosis

Safety information

risk assessment

  • @ref: 39116
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 39116

culture collection no.: CIP 104836, IFM 0273, JCM 7792

straininfo link

  • @ref: 94900
  • straininfo: 65150

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39116Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104836Collection of Institut Pasteur (CIP 104836)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
94900Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID65150.1