Strain identifier

BacDive ID: 138107

Type strain: No

Species: Nocardia paratuberculosis

Strain Designation: 205, 23087

Strain history: CIP <- 1996, JCM <- M. Tsukamura: strain 23087 <- I. Uesaka, Nocardia asteroides <- N.M. McClung: strain 205 <- S. McMillan: strain N-12, "Nocardia paratuberculosis"

NCBI tax ID(s): 37329 (species)

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General

@ref: 39115

BacDive-ID: 138107

keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Nocardia paratuberculosis 205 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from Human sputa.

NCBI tax id

  • NCBI tax id: 37329
  • Matching level: species

strain history

@refhistory
67770M. Tsukamura 23087 <-- I. Uesaka <-- N. M. McClung 205 <-- S. McMillan N-12.
39115CIP <- 1996, JCM <- M. Tsukamura: strain 23087 <- I. Uesaka, Nocardia asteroides <- N.M. McClung: strain 205 <- S. McMillan: strain N-12, "Nocardia paratuberculosis"

doi: 10.13145/bacdive138107.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Nocardia
  • species: Nocardia paratuberculosis
  • full scientific name: Nocardia paratuberculosis Tsukamura 1982

@ref: 39115

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Nocardia

species: Nocardia farcinica

strain designation: 205, 23087

type strain: no

Morphology

cell morphology

  • @ref: 39115
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 39115

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39115MEDIUM 146 - for Nocardia farcinica and Nocardia pseudosporangiferayesDistilled water make up to (1000.000 ml);Sodium chloride (5.000 g);Agar(15.000 g);Glucose (10.000 g);Yeast extract (2.000 g);Beef extract (1.000 g)
39115CIP Medium 146yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=146

culture temp

@refgrowthtypetemperature
39115positivegrowth30
67770positivegrowth28
39115positivegrowth25-45
39115nogrowth10

Physiology and metabolism

oxygen tolerance

  • @ref: 39115
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
39115NaClpositivegrowth0-4 %
39115NaClnogrowth6 %
39115NaClnogrowth8 %
39115NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3911516947citrate-carbon source
391154853esculin+hydrolysis
39115606565hippurate+hydrolysis
3911517632nitrate+reduction
3911516301nitrite-reduction
3911517632nitrate-respiration
68371Potassium 5-ketogluconate-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837112936D-galactose-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837117634D-glucose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from

antibiotic resistance

  • @ref: 39115
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 39115
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3911515688acetoin-
3911517234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-galactosidase+3.2.1.23
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382leucine arylamidase+3.4.11.1
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
39115oxidase-
39115beta-galactosidase+3.2.1.23
39115alcohol dehydrogenase-1.1.1.1
39115amylase-
39115DNase+
39115caseinase+3.4.21.50
39115catalase+1.11.1.6
39115tween esterase-
39115gamma-glutamyltransferase+2.3.2.2
39115lecithinase-
39115lipase-
39115lysine decarboxylase-4.1.1.18
39115ornithine decarboxylase-4.1.1.17
39115phenylalanine ammonia-lyase-4.3.1.24
39115protease+
39115tryptophan deaminase-
39115urease+3.5.1.5
68382acid phosphatase+3.1.3.2
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382lipase (C 14)-

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39115--++-+--+-++-+-++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
39115+/-+/-+/-+/--------+/---+/----------+/-------------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
39115++----------------+----+-------------------+-----+-----------+---++------------++---++--+-------+--

Isolation, sampling and environmental information

isolation

@refsample type
67770Human sputa
39115Human, Sputum

Safety information

risk assessment

  • @ref: 39115
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

GC content

  • @ref: 67770
  • GC-content: 70.7
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 39115

culture collection no.: CIP 104834, ATCC 23826, JCM 6045, IFM 0291

straininfo link

  • @ref: 94899
  • straininfo: 38251

literature

  • topic: Phylogeny
  • Pubmed-ID: 6763136
  • title: Numerical analysis of the taxonomy of Nocardiae and Rhodococci.
  • authors: Tsukamura M
  • journal: Microbiol Immunol
  • DOI: 10.1111/j.1348-0421.1982.tb00260.x
  • year: 1982
  • mesh: Actinomycetales/*classification/growth & development, Drug Resistance, Microbial, Humans, Lung Diseases/etiology, Nocardia/*classification/drug effects/growth & development, Nocardia Infections/complications/microbiology, Nocardia asteroides/growth & development
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39115Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104834Collection of Institut Pasteur (CIP 104834)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
94899Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID38251.1