Strain identifier

BacDive ID: 1381

Type strain: Yes

Species: Ornithinibacillus bavariensis

Strain history: CIP <- 2006, CCM <- R. Mayr, Munich Univ., Munich, Germany: strain WSBC 24001

NCBI tax ID(s): 545502 (species)

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General

@ref: 6033

BacDive-ID: 1381

DSM-Number: 15681

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, halotolerant, spore-forming, mesophilic, Gram-positive, motile, rod-shaped, colony-forming

description: Ornithinibacillus bavariensis DSM 15681 is an obligate aerobe, halotolerant, spore-forming bacterium that forms circular colonies and was isolated from pasteurized milk.

NCBI tax id

  • NCBI tax id: 545502
  • Matching level: species

strain history

@refhistory
6033<- R. Mayr, FML, Freising; WSBC 24001
116766CIP <- 2006, CCM <- R. Mayr, Munich Univ., Munich, Germany: strain WSBC 24001

doi: 10.13145/bacdive1381.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Ornithinibacillus
  • species: Ornithinibacillus bavariensis
  • full scientific name: Ornithinibacillus bavariensis Mayr et al. 2006

@ref: 6033

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Ornithinibacillus

species: Ornithinibacillus bavariensis

full scientific name: Ornithinibacillus bavariensis Mayr et al. 2006

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
23014positive2.0-6.0 µm0.4 µmrod-shapedyes
116766positiverod-shapedyes

colony morphology

  • @ref: 23014
  • type of hemolysis: alpha/beta
  • hemolysis ability: 1
  • colony size: 10.0 mm
  • colony color: slightly brownish/orange
  • colony shape: circular
  • incubation period: 10 days
  • medium used: trypticase soy agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6033NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
23014trypticase soy agaryes
37500MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116766CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
6033positivegrowth30mesophilic
23014positivegrowth15.0psychrophilic
23014positivegrowth45.0thermophilic
23014nogrowth7.0psychrophilic
23014positiveoptimum42.0thermophilic
37500positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
23014positivegrowth7.0-10.0alkaliphile
23014nogrowth6.0
23014nogrowth5.0-6.0

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
23014obligate aerobe
116766obligate aerobe

spore formation

  • @ref: 23014
  • spore description: oval,terminal,in swollen sporangia ((width approx. 0.8 mm) appears racket-shaped)
  • type of spore: endospore
  • spore formation: yes

halophily

@refhalophily levelsaltgrowthtested relationconcentration
23014halotolerant
23014NaClpositivegrowth0.0-10.0 %(w/v)
23014NaCloptimum0.5-4.0 %
23014NaClnogrowth12.0 %

murein

  • @ref: 23014
  • murein short key: A21.04
  • type: A4ß L-Orn-D-Asp

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
23014168082-dehydro-D-gluconate-builds acid from
2301415963ribitol-builds acid from
2301427613amygdalin-builds acid from
2301418305arbutin-builds acid from
2301417108D-arabinose-builds acid from
2301418333D-arabitol-builds acid from
2301428847D-fucose-builds acid from
2301462318D-lyxose-builds acid from
2301416024D-mannose-builds acid from
2301416634raffinose-builds acid from
2301432528turanose-builds acid from
2301465327D-xylose-builds acid from
2301416813galactitol-builds acid from
2301417113erythritol-builds acid from
2301428260galactose-builds acid from
2301428066gentiobiose-builds acid from
2301424265gluconate-builds acid from
2301428087glycogen-builds acid from
2301417268myo-inositol-builds acid from
2301415443inulin-builds acid from
2301430849L-arabinose-builds acid from
2301418403L-arabitol-builds acid from
2301418287L-fucose-builds acid from
2301417266L-sorbose-builds acid from
2301465328L-xylose-builds acid from
2301417716lactose-builds acid from
2301417306maltose-builds acid from
230146731melezitose-builds acid from
2301428053melibiose-builds acid from
23014320061methyl alpha-D-glucopyranoside-builds acid from
2301443943methyl alpha-D-mannoside-builds acid from
2301474863methyl beta-D-xylopyranoside-builds acid from
2301426546rhamnose-builds acid from
2301430911sorbitol-builds acid from
2301428017starch-builds acid from
2301417992sucrose-builds acid from
2301417151xylitol-builds acid from
2301428017starch-hydrolysis
2301417632nitrate-reduction
2301415588D-malate-respiration
2301416651(S)-lactate-respiration
23014172562-deoxyadenosine-respiration
23014645522-hydroxybutyrate-respiration
23014309162-oxoglutarate-respiration
23014620642,3-butanediol-respiration
23014370543-hydroxybutyrate-respiration
23014739183-O-methyl-D-glucose-respiration
23014167244-hydroxybutyrate-respiration
23014181014-hydroxyphenylacetic acid-respiration
2301416335adenosine-respiration
2301440585alpha-cyclodextrin-respiration
2301417925alpha-D-glucose-respiration
2301436219alpha-lactose-respiration
2301416027amp-respiration
2301418305arbutin-respiration
23014495055beta-cyclodextrin-respiration
2301415570D-alanine-respiration
2301418333D-arabitol-respiration
2301417057cellobiose-respiration
2301478697D-fructose 6-phosphate-respiration
2301412936D-galactose-respiration
2301418024D-galacturonic acid-respiration
230148391D-gluconate-respiration
2301414314D-glucose 6-phosphate-respiration
2301416899D-mannitol-respiration
2301416024D-mannose-respiration
230146731melezitose-respiration
2301428053melibiose-respiration
2301427605D-psicose-respiration
2301416634raffinose-respiration
2301416988D-ribose-respiration
2301416443D-tagatose-respiration
2301416551D-trehalose-respiration
2301465327D-xylose-respiration
2301423652dextrin-respiration
2301428066gentiobiose-respiration
2301429042glucose 1-phosphate-respiration
2301414336glycerol 1-phosphate-respiration
2301428087glycogen-respiration
2301417596inosine-respiration
2301415443inulin-respiration
2301421217L-alaninamide-respiration
2301416977L-alanine-respiration
2301430849L-arabinose-respiration
2301417196L-asparagine-respiration
2301418287L-fucose-respiration
2301418183L-pyroglutamic acid-respiration
2301462345L-rhamnose-respiration
2301417115L-serine-respiration
2301475144lactamide-respiration
230146359lactulose-respiration
2301417306maltose-respiration
2301461993maltotriose-respiration
2301428808mannan-respiration
2301474611methyl (R)-lactate-respiration
2301455507methyl alpha-D-galactoside-respiration
23014320061methyl alpha-D-glucopyranoside-respiration
2301443943methyl alpha-D-mannoside-respiration
2301417540methyl beta-D-galactoside-respiration
23014320055methyl beta-D-glucopyranoside-respiration
2301417268myo-inositol-respiration
2301444337N-acetyl-L-glutamate-respiration
2301463154N-acetyl-beta-D-mannosamine-respiration
23014506227N-acetylglucosamine-respiration
2301418394palatinose-respiration
2301417272propionate-respiration
2301417148putrescine-respiration
2301417814salicin-respiration
2301432488sedoheptulosan-respiration
2301417164stachyose-respiration
23014143136succinamate-respiration
2301430031succinate-respiration
2301417992sucrose-respiration
2301417748thymidine-respiration
2301463528thymidine 5'-monophosphate-respiration
2301432528turanose-respiration
2301453426tween 80-respiration
2301416695uridine 5'-monophosphate-respiration
2301416704uridine-respiration
2301417151xylitol-respiration
23014174265-dehydro-D-gluconate+builds acid from
2301417057cellobiose+builds acid from
2301415824D-fructose+builds acid from
2301417634D-glucose+builds acid from
2301417754glycerol+builds acid from
2301429864mannitol+builds acid from
2301433942ribose+builds acid from
2301417814salicin+builds acid from
2301427082trehalose+builds acid from
2301415589L-malate+respiration
23014286442-oxopentanoate+respiration
2301430089acetate+respiration
2301451850methyl pyruvate+respiration
2301415361pyruvate+respiration
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
11676617632nitrate-reduction
11676616301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
2301435581indoleno
2301416136hydrogen sulfideno
2301415688acetoinno
11676635581indoleno

enzymes

@refvalueactivityec
23014alanine aminopeptidase-
23014arginine dihydrolase-3.5.3.6
23014beta-galactosidase-3.2.1.23
23014catalase+1.11.1.6
23014cytochrome oxidase+1.9.3.1
23014gelatinase+
23014lecithinase-
23014lysine decarboxylase-4.1.1.18
23014ornithine decarboxylase-4.1.1.17
23014tryptophan deaminase-4.1.99.1
23014urease-3.5.1.5
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
116766oxidase+
116766catalase+1.11.1.6
116766urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116766-+---+---+++--------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116766+/----+/------++-----+/----+/-----+/-----+/------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperatureisolation date
6033pasteurized milkBavariaGermanyDEUEurope
23014plate-count agarcontaining (l-1): 5.0 g casein peptone (Oxoid), 2.5 g yeast extract (bioMérieux), 1.0 g glucose and 15 g agar agar, pH 7.02.5 days30.0
116766Food, Pasterurized milkBavariaGermanyDEUEurope1994

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Dairy product
#Engineered#Treatment#Preserved
#Engineered#Treatment#Sterilized (Desinfected)

taxonmaps

  • @ref: 69479
  • File name: preview.99_61042.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_867;97_3435;98_43339;99_61042&stattab=map
  • Last taxonomy: Ornithinibacillus
  • 16S sequence: Y13066
  • Sequence Identity:
  • Total samples: 22
  • soil counts: 13
  • aquatic counts: 2
  • animal counts: 4
  • plant counts: 3

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
60331Risk group (German classification)
1167661Risk group (French classification)

Sequence information

16S sequences

  • @ref: 23014
  • description: Ornithinibacillus bavariensis 16S rRNA gene, strain WSBC 24001
  • accession: Y13066
  • length: 1451
  • database: nuccore
  • NCBI tax ID: 545502

Genome sequences

  • @ref: 66792
  • description: Ornithinibacillus bavariensis DSM 15681
  • accession: 2861566911
  • assembly level: draft
  • database: img
  • NCBI tax ID: 545502

GC content

@refGC-contentmethod
603336.4
2301436.4high performance liquid chromatography (HPLC)

External links

@ref: 6033

culture collection no.: DSM 15681, CCM 7096, WSBC 24001, CIP 109287

straininfo link

  • @ref: 71032
  • straininfo: 139420

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16738118Ornithinibacillus gen. nov., with the species Ornithinibacillus bavariensis sp. nov. and Ornithinibacillus californiensis sp. nov.Mayr R, Busse HJ, Worliczek HL, Ehling-Schulz M, Scherer SInt J Syst Evol Microbiol10.1099/ijs.0.64038-02006Catalase/metabolism, Fatty Acids/analysis, Gram-Positive Bacteria/*classification/*genetics/isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, Species SpecificityMetabolism
Phylogeny20118298Ornithinibacillus contaminans sp. nov., an endospore-forming species.Kampfer P, Falsen E, Lodders N, Langer S, Busse HJ, Schumann PInt J Syst Evol Microbiol10.1099/ijs.0.021337-02010Aged, Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Female, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sweden, Vitamin K 2/analogs & derivatives/chemistryPathogenicity
Phylogeny22611200Ornithinibacillus halophilus sp. nov., a moderately halophilic, Gram-stain-positive, endospore-forming bacterium from a hypersaline lake.Bagheri M, Amoozegar MA, Schumann P, Didari M, Mehrshad M, Sproer C, Sanchez-Porro C, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.041350-02012Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Iran, Lakes/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Sodium Chloride, *Water MicrobiologyGenetics
Phylogeny29458475Ornithinibacillus salinisoli sp. nov., a moderately halophilic bacterium isolated from a saline-alkali soil.Gan L, Zhang H, Long X, Tian J, Wang Z, Zhang Y, Dai Y, Tian YInt J Syst Evol Microbiol10.1099/ijsem.0.0025802018Alkalies, Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6033Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15681)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15681
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23014R. Mayr,H.-J. Busse,H. L. Worliczek,M. Ehling-Schulz,S. Scherer10.1099/ijs.0.64038-0Ornithinibacillus gen. nov., with the species Ornithinibacillus bavariensis sp. nov. and Ornithinibacillus californiensis sp. nov.IJSEM 56: 1383-1389 200616738118
37500Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7011
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71032Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID139420.1StrainInfo: A central database for resolving microbial strain identifiers
116766Curators of the CIPCollection of Institut Pasteur (CIP 109287)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109287