Strain identifier

BacDive ID: 138068

Type strain: No

Species: Campylobacter fetus subsp. venerealis

Strain Designation: 483 vache

Strain history: CIP <- 1953, A. Florent: strain 483 vache <- J. Gallut

NCBI tax ID(s): 1265739 (strain), 32020 (subspecies)

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General

@ref: 39025

BacDive-ID: 138068

keywords: genome sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative

description: Campylobacter fetus subsp. venerealis 483 vache is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from Cow, abortion product.

NCBI tax id

NCBI tax idMatching level
1265739strain
32020subspecies

strain history

  • @ref: 39025
  • history: CIP <- 1953, A. Florent: strain 483 vache <- J. Gallut

doi: 10.13145/bacdive138068.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter fetus subsp. venerealis
  • full scientific name: Campylobacter fetus subsp. venerealis (Florent 1959) Véron and Chatelain 1973 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Vibrio fetus subsp. venerealis

@ref: 39025

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter fetus subsp. venerealis

strain designation: 483 vache

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
125438negative97.455
125439negative94.3
39025negativerod-shapedno

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39025MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
39025CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

  • @ref: 39025
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 39025
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
125438no94.863
125439no97.4

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3902517632nitrate+reduction
3902516301nitrite+reduction
68371Potassium 5-ketogluconate+builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose+builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin+builds acid from
6837159640N-acetylglucosamine-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose-builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

metabolite production

  • @ref: 39025
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-glucosidase+3.2.1.20
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-galactosidase-3.2.1.22
68382acid phosphatase+3.1.3.2
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
39025oxidase+
39025catalase+1.11.1.6
39025urease-3.5.1.5
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382leucine arylamidase+3.4.11.1

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39025-+++-+----++---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
39025------------------------+------------------+----+

Isolation, sampling and environmental information

isolation

  • @ref: 39025
  • sample type: Cow, abortion product
  • isolation date: 1953

Safety information

risk assessment

  • @ref: 39025
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter fetus subsp. venerealis LMG 6570 = CCUG 33900GCA_001698935contigncbi1265739
66792Campylobacter fetus subsp. venerealis LMG 6570 = CCUG 33900GCA_001699715contigncbi1265739
66792Campylobacter fetus subsp. venerealis LMG 6570 = CCUG 339001265739.5wgspatric1265739
66792Campylobacter fetus subsp. venerealis LMG 6570 = CCUG 339001265739.3wgspatric1265739

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe71.9
125439BacteriaNetgram_stainReaction to gram-stainingnegative94.3
125439BacteriaNetmotilityAbility to perform movementno68.8
125439BacteriaNetspore_formationAbility to form endo- or exosporesno97.4
125438gram-positivegram-positivePositive reaction to Gram-stainingno97.455no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no76.337yes
125438spore-formingspore-formingAbility to form endo- or exosporesno94.863no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no79.553no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno88.989yes
125438motile2+flagellatedAbility to perform flagellated movementyes61.519no

External links

@ref: 39025

culture collection no.: CIP 53.105, CCUG 33900

straininfo link

  • @ref: 94865
  • straininfo: 14249

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39025Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2053.105Collection of Institut Pasteur (CIP 53.105)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
94865Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID14249.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG