Strain identifier

BacDive ID: 138032

Type strain: No

Species: Microbacterium phyllosphaerae

Strain Designation: 538.86

Strain history: CIP <- 1986, Lab. Ident. Inst. Pasteur, Paris, France: strain 538.86 <- Royan Hosp., Royan, France, "Microbacterium sp."

NCBI tax ID(s): 124798 (species)

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General

@ref: 38987

BacDive-ID: 138032

keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Microbacterium phyllosphaerae 538.86 is an obligate aerobe, mesophilic, Gram-positive bacterium of the family Microbacteriaceae.

NCBI tax id

  • NCBI tax id: 124798
  • Matching level: species

strain history

  • @ref: 38987
  • history: CIP <- 1986, Lab. Ident. Inst. Pasteur, Paris, France: strain 538.86 <- Royan Hosp., Royan, France, "Microbacterium sp."

doi: 10.13145/bacdive138032.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Microbacterium
  • species: Microbacterium phyllosphaerae
  • full scientific name: Microbacterium phyllosphaerae Behrendt et al. 2001

@ref: 38987

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium phyllosphaerae

strain designation: 538.86

type strain: no

Morphology

cell morphology

  • @ref: 38987
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 38987
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38987MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
38987CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
38987positivegrowth30mesophilic
38987positivegrowth10-37
38987nogrowth41thermophilic
38987nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 38987
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
38987NaClpositivegrowth0-4 %
38987NaClnogrowth6 %
38987NaClnogrowth8 %
38987NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-ribose-builds acid from16988
68371erythritol-builds acid from17113
38987citrate-carbon source16947
38987esculin+hydrolysis4853
38987hippurate+hydrolysis606565
38987nitrate-reduction17632
38987nitrite-reduction16301
38987nitrate-respiration17632

antibiotic resistance

  • @ref: 38987
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 38987
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3898715688acetoin-
3898717234glucose+

enzymes

@refvalueactivityec
38987oxidase-
38987beta-galactosidase+3.2.1.23
38987alcohol dehydrogenase-1.1.1.1
38987gelatinase+/-
38987amylase+
38987DNase+
38987caseinase+3.4.21.50
38987catalase+1.11.1.6
38987tween esterase-
38987gamma-glutamyltransferase-2.3.2.2
38987lecithinase-
38987lipase-
38987lysine decarboxylase-4.1.1.18
38987ornithine decarboxylase-4.1.1.17
38987phenylalanine ammonia-lyase-4.3.1.24
38987protease+
38987tryptophan deaminase-
38987urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
38987-+++-++-+-+-++-++++-

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
38987+/--+/-+/--+/----++++-+/------+/--+/-+++++-+/-+/----+/-+/-+--+/-+/---+/---+/---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
38987+++++-+++++----++-+++++--+-----+-+++---+---------+------+++-+-----------+-----+++--------++--------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
38987RoyanFranceFRAEurope
38987RoyanFranceFRAEuropeHuman, Urine1986

Safety information

risk assessment

  • @ref: 38987
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 38987

culture collection no.: CIP 102552

straininfo link

  • @ref: 94832
  • straininfo: 69290

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38987Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102552Collection of Institut Pasteur (CIP 102552)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
94832Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID69290.1