Strain identifier

BacDive ID: 13799

Type strain: Yes

Species: Sulfitobacter guttiformis

Strain Designation: EL-38

Strain history: <- DSM <- M Labrenz <- P Hirsch, Inst. Allg. Mikrobiol. Univ. Kiel.

NCBI tax ID(s): 1443111 (strain), 74349 (species)

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General

@ref: 4375

BacDive-ID: 13799

DSM-Number: 11458

keywords: genome sequence, 16S sequence, Bacteria, aerobe, psychrophilic, Gram-negative

description: Sulfitobacter guttiformis EL-38 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from water.

NCBI tax id

NCBI tax idMatching level
1443111strain
74349species

strain history

@refhistory
4375<- M. Labrenz <- P. Hirsch, Inst. Allg. Mikrobiol. Univ. Kiel
67770IAM 15346 <-- M. Labrenz EL-38 <-- P. Hirsch.
67771<- DSM <- M Labrenz <- P Hirsch, Inst. Allg. Mikrobiol. Univ. Kiel.

doi: 10.13145/bacdive13799.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Sulfitobacter
  • species: Sulfitobacter guttiformis
  • full scientific name: Sulfitobacter guttiformis (Labrenz et al. 2000) Yoon et al. 2007

  • synonyms

    • @ref: 20215
    • synonym: Staleya guttiformis

@ref: 4375

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Sulfitobacter

species: Sulfitobacter guttiformis

full scientific name: Sulfitobacter guttiformis (Labrenz et al. 2000) Yoon et al. 2007

strain designation: EL-38

type strain: yes

Morphology

cell morphology

@refgram stainconfidence
67771negative
69480negative99.978

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4375BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
4375EKHO LAKE STRAINS MEDIUM (DSMZ Medium 621a)yeshttps://mediadive.dsmz.de/medium/621aName: EKHO LAKE STRAINS MEDIUM (DSMZ Medium 621a) Composition: NaCl 22.6553 g/l Agar 15.0 g/l MgCl2 x 6 H2O 4.80666 g/l Na2SO4 3.77991 g/l CaCl2 1.06343 g/l KCl 0.64076 g/l MgSO4 x 7 H2O 0.625264 g/l Glucose 0.25 g/l Peptone 0.25 g/l Yeast extract 0.25 g/l Nitrilotriacetic acid 0.210526 g/l NaHCO3 0.18528 g/l CaCl2 x 2 H2O 0.0703158 g/l H3BO3 0.02509 g/l SrCl2 0.02316 g/l KBr 0.00579 g/l NaF 0.002895 g/l FeSO4 x 7 H2O 0.00208422 g/l Na2MoO4 x 2 H2O 0.000266736 g/l Pyridoxine hydrochloride 0.0001 g/l D-Calcium pantothenate 5e-05 g/l Nicotinamide 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavine 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Vitamin B12 1e-06 g/l Metall salt sol. 44 Distilled water

culture temp

@refgrowthtypetemperaturerange
4375positivegrowth20psychrophilic
67770positivegrowth20psychrophilic
67771positivegrowth20psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.999

observation

  • @ref: 67770
  • observation: quinones: Q-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
4375----------------+/----+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcontinentcountryorigin.country
4375waterEkho Lake, Vestfold HillsAustralia and Oceania
67771From Water; East Antarctica, Ekho LakeVestfold HillsAustralia and OceaniaAntarcticaATA
67770Water from a depth of 1 m, Ekho LakeVestfold HillsAntarcticaAntarcticaATA

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

Safety information

risk assessment

  • @ref: 4375
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 4375
  • description: Staleya guttiformis 16S rRNA gene (strain Ekho Lake-38)
  • accession: Y16427
  • length: 1353
  • database: ena
  • NCBI tax ID: 74349

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sulfitobacter guttiformis KCTC 32187GCA_000622425contigncbi1443111
66792Sulfitobacter guttiformis DSM 11458GCA_003610455contigncbi74349
66792Sulfitobacter guttiformis KCTC 321871443111.3wgspatric1443111
66792Sulfitobacter guttiformis strain DSM 1145874349.12plasmidpatric74349
66792Sulfitobacter guttiformis strain DSM 1145874349.11plasmidpatric74349
66792Sulfitobacter guttiformis strain DSM 1145874349.10plasmidpatric74349
66792Sulfitobacter guttiformis strain DSM 1145874349.17wgspatric74349
66792Sulfitobacter guttiformis KCTC 321872579778904draftimg1443111
66792Sulfitobacter guttiformis DSM 114582737471612draftimg74349

GC content

@refGC-contentmethod
437555.0-56.3high performance liquid chromatography (HPLC)
6777055-56high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno55.574no
gram-positiveno97.906yes
anaerobicno98.706no
halophileyes83.593no
spore-formingno96.479no
thermophileno98.476yes
glucose-utilyes54.056yes
aerobicyes94.374yes
flagellatedno91.196no
glucose-fermentno93.519no

External links

@ref: 4375

culture collection no.: DSM 11458, ATCC BAA 5, JCM 21791, KCTC 32187, IAM 15346, KCTC 12526, LMG 19755

straininfo link

  • @ref: 82977
  • straininfo: 14985

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10826817Staleya guttiformis gen. nov., sp. nov. and Sulfitobacter brevis sp. nov., alpha-3-Proteobacteria from hypersaline, heliothermal and meromictic antarctic Ekho Lake.Labrenz M, Tindall BJ, Lawson PA, Collins MD, Schumann P, Hirsch PInt J Syst Evol Microbiol10.1099/00207713-50-1-3032000Alphaproteobacteria/chemistry/*classification/cytology/physiology, Antarctic Regions, Base Composition, Culture Media, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, Sulfites/metabolism, Temperature, *Water MicrobiologyCultivation
18539467Staleya guttiformis attachment on poly(tert-butylmethacrylate) polymeric surfaces.Ivanova EP, Mitik-Dineva N, Wang J, Pham DK, Wright JP, Nicolau DV, Mocanasu RC, Crawford RJMicron10.1016/j.micron.2008.04.0092008Alphaproteobacteria/*physiology/ultrastructure, *Bacterial Adhesion, Methacrylates/chemistry, Microscopy, Atomic Force, Microscopy, Electron, Scanning, Polymers/*chemistry, Surface Properties

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4375Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11458)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11458
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82977Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14985.1StrainInfo: A central database for resolving microbial strain identifiers