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Strain identifier

BacDive ID: 13787

Type strain: Yes

Species: Tritonibacter scottomollicae

Strain Designation: R-28751

Strain history: <- CCUG <- I. Vandecandelaere, LMG; R-28751

NCBI tax ID(s): 483013 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18003

BacDive-ID: 13787

DSM-Number: 25328

keywords: genome sequence, 16S sequence, Bacteria, aerobe, psychrophilic, Gram-negative, motile, ovoid-shaped

description: Tritonibacter scottomollicae R-28751 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from marine biofilm on stainless steel electrode.

NCBI tax id

  • NCBI tax id: 483013
  • Matching level: species

strain history: <- CCUG <- I. Vandecandelaere, LMG; R-28751

doi: 10.13145/bacdive13787.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Rhodobacteraceae
  • genus: Tritonibacter
  • species: Tritonibacter scottomollicae
  • full scientific name: Tritonibacter scottomollicae (Vandecandelaere et al. 2008) Hördt et al. 2020
  • synonyms

    @refsynonym
    20215Epibacterium scottomollicae
    20215Ruegeria scottomollicae

@ref: 18003

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Tritonibacter

species: Tritonibacter scottomollicae

full scientific name: Tritonibacter scottomollicae (Vandecandelaere et al. 2008) Hördt et al. 2020

strain designation: R-28751

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32649negative1.3 µm1 µmovoid-shapedyes
69480negative99.218

colony morphology

@refincubation period
180031-2 days
607622-3 days

pigmentation

  • @ref: 32649
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 18003
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18003positivegrowth20psychrophilic
32649positivegrowth04-40
32649positiveoptimum30mesophilic
60762positivegrowth20psychrophilic

culture pH

@refabilitytypepHPH range
32649positivegrowth05-09alkaliphile
32649positiveoptimum6.5-8.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32649aerobe
60762aerobe

spore formation

@refspore formationconfidence
32649no
69480no98.028

halophily

@refsaltgrowthtested relationconcentrationhalophily levelconfidence
32649NaClpositivegrowth01-15 %
32649NaClpositiveoptimum01-15 %
69480non-halophilic84.695

observation

  • @ref: 32649
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
326494853esculin+hydrolysis
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

@refChebi-IDmetaboliteproduction
3264935581indoleyes
6836935581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
3264935581indole+
6836935581indole-

enzymes

@refvalueactivityec
18003catalase+1.11.1.6
18003cytochrome-c oxidase+1.9.3.1
32649alkaline phosphatase+3.1.3.1
32649alpha-galactosidase+3.2.1.22
32649catalase+1.11.1.6
32649cytochrome oxidase+1.9.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
18003-----+/--+/----+/-++---+--+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
18003marine biofilm on stainless steel electrodeGenuaItalyITAEurope
60762Marine biofilm on stainless steel electrodeGenoa,the harbourItalyITAEurope2004-10-01

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Engineered product
#Environmental#Aquatic#Marine
#Environmental#Biofilm

taxonmaps

  • @ref: 69479
  • File name: preview.99_10156.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_355;97_566;98_1495;99_10156&stattab=map
  • Last taxonomy: Epibacterium scottomollicae
  • 16S sequence: AM905330
  • Sequence Identity:
  • Total samples: 75
  • soil counts: 1
  • aquatic counts: 72
  • animal counts: 2

Safety information

risk assessment

  • @ref: 18003
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18003
  • description: Ruegeria scottomollicae partial 16S rRNA gene, type strain LMG 24367T
  • accession: AM905330
  • length: 1398
  • database: ena
  • NCBI tax ID: 483013

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Tritonibacter scottomollicae DSM 25328GCA_003003215scaffoldncbi483013
66792Ruegeria scottomollicae strain DSM 25328483013.3wgspatric483013
66792Epibacterium scottomollicae DSM 253282728369517draftimg483013
66792Salmonella enterica subsp. enterica serovar Mbandaka HIY0024GCA_006227365scaffoldpatric192954

GC content

  • @ref: 32649
  • GC-content: 60.6-61.4

External links

@ref: 18003

culture collection no.: DSM 25328, CCUG 55858, LMG 24367

straininfo link

@refpassport
20218http://www.straininfo.net/strains/836306
20218http://www.straininfo.net/strains/802298

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19060048Ruegeria scottomollicae sp. nov., isolated from a marine electroactive biofilm.Vandecandelaere I, Nercessian O, Segaert E, Achouak W, Faimali M, Vandamme PInt J Syst Evol Microbiol10.1099/ijs.0.65843-02008Alphaproteobacteria/chemistry/*classification/genetics/*physiology/ultrastructure, *Biofilms, *Electricity, Electrodes/*microbiology, Fatty Acids/analysis, Marine Biology, Microscopy, Electron, Transmission, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Species SpecificityGenetics
Phylogeny25180090Cribrihabitans neustonicus sp. nov., isolated from coastal surface seawater, and emended description of the genus Cribrihabitans Chen et al. 2014.Hameed A, Shahina M, Lin SY, Lai WA, Liu YC, Hsu YH, Young CCInt J Syst Evol Microbiol10.1099/ijs.0.066142-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Taiwan, Ubiquinone/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
18003Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25328)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25328
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2886010.1099/ijs.0.65843-019060048
32649Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604128860
60762Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 55858)https://www.ccug.se/strain?id=55858
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)