Strain identifier

BacDive ID: 137866

Type strain: No

Species: Pseudomonas oryzihabitans

Strain Designation: 904-85

Strain history: CIP <- 1985, Lab. Ident. Inst. Pasteur, Paris, France: strain 904-85 <- Besançon Hosp., France

NCBI tax ID(s): 47885 (species)

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General

@ref: 38815

BacDive-ID: 137866

keywords: Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Pseudomonas oryzihabitans 904-85 is a mesophilic, Gram-negative, motile bacterium of the family Pseudomonadaceae.

NCBI tax id

  • NCBI tax id: 47885
  • Matching level: species

strain history

  • @ref: 38815
  • history: CIP <- 1985, Lab. Ident. Inst. Pasteur, Paris, France: strain 904-85 <- Besançon Hosp., France

doi: 10.13145/bacdive137866.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas oryzihabitans
  • full scientific name: Pseudomonas oryzihabitans Kodama et al. 1985

  • synonyms

    @refsynonym
    20215Pseudomonas psychrotolerans
    20215Flavimonas oryzihabitans

@ref: 38815

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas oryzihabitans

strain designation: 904-85

type strain: no

Morphology

cell morphology

  • @ref: 38815
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 38815
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38815MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
38815CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
38815positivegrowth30mesophilic
38815positivegrowth25-37mesophilic
38815nogrowth5psychrophilic
38815nogrowth10psychrophilic
38815nogrowth41thermophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
38815NaClpositivegrowth0-6 %
38815NaClnogrowth8 %
38815NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3881516947citrate+carbon source
388154853esculin-hydrolysis
3881517632nitrate+reduction
3881516301nitrite-reduction
3881517632nitrate-respiration

antibiotic resistance

  • @ref: 38815
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 38815
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
38815oxidase-
38815beta-galactosidase-3.2.1.23
38815alcohol dehydrogenase-1.1.1.1
38815gelatinase-
38815amylase-
38815DNase-
38815caseinase-3.4.21.50
38815catalase+1.11.1.6
38815tween esterase-
38815lecithinase+
38815lipase-
38815lysine decarboxylase-4.1.1.18
38815ornithine decarboxylase-4.1.1.17
38815protease-
38815tryptophan deaminase-
38815urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
38815-+++-++-+-++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
38815+++++----++--------+++-+--+----+++--+------++--+++++-++++---+-++++-----+++-+++-++-+-+-+-+++++++-+-+

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
38815BesançonFranceFRAEurope
38815BesançonFranceFRAEuropeHuman, Blood1985

Safety information

risk assessment

  • @ref: 38815
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 38815

culture collection no.: CIP 101989

straininfo link

  • @ref: 94679
  • straininfo: 69811

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38815Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20101989Collection of Institut Pasteur (CIP 101989)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
94679Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID69811.1