Strain identifier
BacDive ID: 13786
Type strain:
Species: Epibacterium mobile
Strain Designation: N-615G15
Strain history: CIP <- 2006, NBRC <- NITE <- MBIC01146 <- H. Izumida, Marine Biotechnol. Inst., Alcaligenes sp.: strain N-615G15
NCBI tax ID(s): 379347 (species)
General
@ref: 16845
BacDive-ID: 13786
DSM-Number: 23403
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Epibacterium mobile N-615G15 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from marine slime.
NCBI tax id
- NCBI tax id: 379347
- Matching level: species
strain history
@ref | history |
---|---|
16845 | <- NBRC; NBRC 101030 <- NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Japan <- H. Izumida, Marine Biotechnol. Inst., Kamaishi, Japan; MBIC 01146 |
120987 | CIP <- 2006, NBRC <- NITE <- MBIC01146 <- H. Izumida, Marine Biotechnol. Inst., Alcaligenes sp.: strain N-615G15 |
doi: 10.13145/bacdive13786.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Epibacterium
- species: Epibacterium mobile
- full scientific name: Epibacterium mobile (Muramatsu et al. 2007) Wirth and Whitman 2018
synonyms
@ref synonym 20215 Tritonibacter mobilis 20215 Tritonibacter mobilis subsp. pelagius 20215 Ruegeria pelagia 20215 Ruegeria mobilis
@ref: 16845
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Epibacterium
species: Epibacterium mobile
full scientific name: Tritonibacter mobilis subsp. mobilis (Muramatsu et al. 2007) Hördt et al. 2020
strain designation: N-615G15
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
31871 | negative | 01-02 µm | 0.6-0.8 µm | rod-shaped | yes | |
69480 | negative | 99.993 | ||||
120987 | negative | oval-shaped | yes |
colony morphology
- @ref: 120987
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
16845 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
37467 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
120987 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16845 | positive | growth | 28 | mesophilic |
31871 | positive | growth | 05-35 | |
31871 | positive | optimum | 25-30 | mesophilic |
37467 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
31871 | positive | growth | 05-11 | alkaliphile |
31871 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
31871 | aerobe |
120987 | obligate aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.991 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
31871 | NaCl | positive | growth | 0-10 % |
31871 | NaCl | positive | optimum | 01-03 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31871 | 15963 | ribitol | + | carbon source |
31871 | 22599 | arabinose | + | carbon source |
31871 | 18403 | L-arabitol | + | carbon source |
31871 | 28757 | fructose | + | carbon source |
31871 | 33984 | fucose | + | carbon source |
31871 | 29864 | mannitol | + | carbon source |
31871 | 30911 | sorbitol | + | carbon source |
31871 | 17151 | xylitol | + | carbon source |
120987 | 17632 | nitrate | - | reduction |
120987 | 16301 | nitrite | - | reduction |
metabolite production
- @ref: 120987
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
31871 | catalase | + | 1.11.1.6 |
31871 | cytochrome oxidase | + | 1.9.3.1 |
120987 | oxidase | + | |
120987 | alcohol dehydrogenase | - | 1.1.1.1 |
120987 | catalase | + | 1.11.1.6 |
120987 | lysine decarboxylase | - | 4.1.1.18 |
120987 | ornithine decarboxylase | - | 4.1.1.17 |
120987 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120987 | - | + | + | + | - | + | + | + | - | - | + | + | - | - | - | + | + | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
16845 | marine slime | Ishigaki Island | Japan | JPN | Asia |
120987 | Environment, Slime, marine environment | Okinawa | Japan | JPN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_1008.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_355;97_675;98_785;99_1008&stattab=map
- Last taxonomy: Epibacterium mobile subclade
- 16S sequence: AB255401
- Sequence Identity:
- Total samples: 19312
- soil counts: 558
- aquatic counts: 16540
- animal counts: 2089
- plant counts: 125
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
16845 | 1 | Risk group (German classification) |
120987 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Ruegeria mobilis strain NBRC 101030 16S ribosomal RNA gene, partial sequence | EU977137 | 1425 | ena | 379347 |
16845 | Ruegeria mobilis gene for 16S ribosomal RNA, partial sequence, strain: NBRC 101030 | AB255401 | 1387 | ena | 379347 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Tritonibacter mobilis DSM 23403 | GCA_900106635 | contig | ncbi | 379347 |
66792 | Tritonibacter mobilis NBRC101030 | GCA_001681715 | contig | ncbi | 379347 |
66792 | Epibacterium mobile strain DSM 23403 | 379347.178 | wgs | patric | 379347 |
66792 | Ruegeria mobilis strain NBRC101030 | 379347.143 | wgs | patric | 379347 |
66792 | Epibacterium mobile NBRC 101030 | 2816332498 | draft | img | 379347 |
66792 | Epibacterium mobile DSM 23403 | 2693429875 | draft | img | 379347 |
GC content
- @ref: 16845
- GC-content: 58.5
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
gram-positive | no | 98.761 | yes |
anaerobic | no | 99.023 | yes |
halophile | yes | 83.631 | no |
spore-forming | no | 96.31 | no |
glucose-util | yes | 89.403 | no |
aerobic | yes | 88.262 | yes |
motile | yes | 81.765 | yes |
flagellated | no | 65.214 | no |
thermophile | no | 95.633 | no |
glucose-ferment | no | 88.976 | no |
External links
@ref: 16845
culture collection no.: DSM 23403, CIP 109181, MBIC 01146, NBRC 101030
straininfo link
- @ref: 82964
- straininfo: 199626
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
---|---|---|---|---|---|---|---|
16845 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23403) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23403 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
31871 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 28131 | ||
37467 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6893 | |||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
68382 | Automatically annotated from API zym | ||||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
82964 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID199626.1 | StrainInfo: A central database for resolving microbial strain identifiers | ||||
120987 | Curators of the CIP | Collection of Institut Pasteur (CIP 109181) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109181 |