Strain identifier
BacDive ID: 13781
Type strain: 
Species: Ruegeria meteori
Strain Designation: 1513
Strain history: IAM 14464 <-- DSM 5824 <-- H.-J. Rüger 1513.
NCBI tax ID(s): 81569 (species)
version 8.1 (current version)
General
@ref: 2329
BacDive-ID: 13781
DSM-Number: 5824
keywords: 16S sequence, Bacteria, psychrophilic
description: Ruegeria meteori 1513 is a psychrophilic bacterium that was isolated from marine upwelling area.
NCBI tax id
- NCBI tax id: 81569
- Matching level: species
strain history
| @ref | history |
|---|---|
| 2329 | <- H.-J. Rüger (Agrobacterium meteori), 1513 |
| 67770 | IAM 14464 <-- DSM 5824 <-- H.-J. Rüger 1513. |
doi: 10.13145/bacdive13781.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Ruegeria
- species: Ruegeria meteori
- full scientific name: Ruegeria meteori (Rüger and Höfle 1992) Hördt et al. 2020
synonyms
- @ref: 20215
- synonym: Agrobacterium meteori
@ref: 2329
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Ruegeria
species: Ruegeria atlantica
full scientific name: Ruegeria atlantica (Rüger and Höfle 1992) Uchino et al. 1999 emend. Yi et al. 2007 emend. Muramatsu et al. 2007 emend. Vandecandelaere et al. 2008
strain designation: 1513
type strain: no
Culture and growth conditions
culture medium
- @ref: 2329
- name: MARINE AGAR (DSMZ Medium 123)
- growth: yes
- link: https://mediadive.dsmz.de/medium/123
- composition: Name: MARINE AGAR (DSMZ Medium 123) Composition: NaCl 24.0 g/l Agar 15.0 g/l MgCl2 x 6 H2O 11.0 g/l Bacto peptone 5.0 g/l Na2SO4 4.0 g/l CaCl2 x 6 H2O 2.0 g/l Yeast extract 1.0 g/l KCl 0.7 g/l KBr 0.1 g/l SrCl2 x 6 H2O 0.04 g/l H3BO3 0.03 g/l NaSiO3 x 9 H2O 0.005 g/l NaF 0.003 g/l NH4NO3 0.002 g/l Fe(III)PO4 x 4 H2O 0.001 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 2329 | positive | growth | 20 | psychrophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | latitude | longitude |
|---|---|---|---|---|
| 2329 | marine upwelling area | Africa NW (21° 22.5' N; 17° 34.3' W) | 21.375 | -17.5717 |
| 67770 | Marine sediments of the eastern Atlantic Ocean |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
Safety information
risk assessment
- @ref: 2329
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 67770
- description: Agrobacterium meteori gene for 16S rRNA, partial sequence
- accession: D88527
- length: 1382
- database: ena
- NCBI tax ID: 81569
GC content
- @ref: 67770
- GC-content: 58
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 2329
culture collection no.: DSM 5824, JCM 21235, ATCC 700001, IAM 14464, IFO 15793, NBRC 15793
straininfo link
- @ref: 82960
- straininfo: 46206
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 1371058 | Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom. rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev. | Ruger HJ, Hofle MG | Int J Syst Bacteriol | 10.1099/00207713-42-1-133 | 1992 | DNA, Bacterial/analysis, Genotype, Phenotype, RNA, Bacterial/analysis, Rhizobium/*classification/genetics/physiology, Seawater, *Water Microbiology | Genetics |
| Phylogeny | 12501429 | Reclassification of marine Agrobacterium species: Proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev. | Uchino Y, Hirata A, Yokota A, Sugiyama J | J Gen Appl Microbiol | 10.2323/jgam.44.201 | 1998 |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 2329 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5824) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5824 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 82960 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID46206.1 | StrainInfo: A central database for resolving microbial strain identifiers |