Strain identifier

BacDive ID: 137802

Type strain: No

Species: Microbacterium oxydans

Strain Designation: 229.87

Strain history: CIP <- 1987, Lab. Ident. Inst. Pasteur, Paris, France: strain 229.87 <- INA, Paris, France, "Microbacterium sp."

NCBI tax ID(s): 82380 (species)

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General

@ref: 38741

BacDive-ID: 137802

keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Microbacterium oxydans 229.87 is an obligate aerobe, mesophilic, Gram-positive bacterium of the family Microbacteriaceae.

NCBI tax id

  • NCBI tax id: 82380
  • Matching level: species

strain history

  • @ref: 38741
  • history: CIP <- 1987, Lab. Ident. Inst. Pasteur, Paris, France: strain 229.87 <- INA, Paris, France, "Microbacterium sp."

doi: 10.13145/bacdive137802.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Microbacterium
  • species: Microbacterium oxydans
  • full scientific name: Microbacterium oxydans (Chatelain and Second 1966) Schumann et al. 1999

  • synonyms

    • @ref: 20215
    • synonym: Brevibacterium oxydans

@ref: 38741

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium oxydans

strain designation: 229.87

type strain: no

Morphology

cell morphology

  • @ref: 38741
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 38741
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38741MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
38741CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
38741CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
38741positivegrowth30
38741positivegrowth10-41
38741nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 38741
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
38741NaClpositivegrowth0-4 %
38741NaClnogrowth6 %
38741NaClnogrowth8 %
38741NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3874116947citrate-carbon source
387414853esculin+hydrolysis
38741606565hippurate-hydrolysis
3874117632nitrate-reduction
3874116301nitrite-reduction
3874117632nitrate-respiration
68371Potassium 5-ketogluconate-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose+builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol+builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol+builds acid from

antibiotic resistance

  • @ref: 38741
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 38741
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3874115688acetoin-
3874117234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase+3.2.1.51
68382alpha-mannosidase+3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382alpha-chymotrypsin+3.4.21.1
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382esterase lipase (C 8)+
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
38741oxidase-
38741beta-galactosidase+3.2.1.23
38741alcohol dehydrogenase-1.1.1.1
38741gelatinase+/-
38741amylase-
38741DNase+
38741caseinase+3.4.21.50
38741catalase+1.11.1.6
38741tween esterase-
38741gamma-glutamyltransferase-2.3.2.2
38741lecithinase-
38741lipase-
38741lysine decarboxylase-4.1.1.18
38741ornithine decarboxylase-4.1.1.17
38741phenylalanine ammonia-lyase-4.3.1.24
38741protease+
38741tryptophan deaminase-
38741urease-3.5.1.5
68382beta-glucuronidase-3.2.1.31
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382trypsin-3.4.21.4

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
38741-+++-+---+++++-+++++

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
38741+-+/-------++++-+/---+--+/---+/-+/-+/-+/-+/---+/---+---+/-+/-+/----------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
38741+++++--++++----++-+---++-+--+--+-+-+------------++---+--+--+++----------+----++++-----+-++++-----+-

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
38741ParisFranceFRAEurope
38741ParisFranceFRAEuropeAnimal, Tadpole, intestine1987

Safety information

risk assessment

  • @ref: 38741
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 38741

culture collection no.: CIP 102957

straininfo link

  • @ref: 94622
  • straininfo: 69295

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38741Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102957Collection of Institut Pasteur (CIP 102957)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
94622Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID69295.1